Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015644.1 Corchorus olitorius cultivar O-4 contig15677, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13606
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:1131 original size:19 final size:18

Alignment explanation


    Indices: 1098--1133  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       1088 TTGAAATTAT

                              
       1098 TCTTCAATGGTCTTCAAA
          1 TCTTCAATGGTCTTCAAA

                     *        
       1116 TCTTCAAATTGTCTTCAA
          1 TCTTC-AATGGTCTTCAA

       1134 TAAGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42


Consensus pattern (18 bp):   
TCTTCAATGGTCTTCAAA

Found at i:12774 original size:16 final size:17

Alignment explanation


    Indices: 12753--12784  Score: 57
    Period size: 16  Copynumber: 1.9  Consensus size: 17

      12743 GAAATTGCGT

                             
      12753 TTTATTTTTC-ATTTTC
          1 TTTATTTTTCTATTTTC

                            
      12769 TTTATTTTTCTATTTT
          1 TTTATTTTTCTATTTT

      12785 GCACTTGATC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  16   10  0.67
  17    5  0.33

ACGTcount: A:0.12, C:0.09, G:0.00, T:0.78


Consensus pattern (17 bp):   
TTTATTTTTCTATTTTC

Done.