Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015648.1 Corchorus olitorius cultivar O-4 contig15681, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79329

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1852--1953
51
2.0
50
83
9
127
22
23
12
41
1.88
18641--18841
41
4.8
41
83
7
244
40
27
11
19
1.87
18641--18841
84
2.4
83
92
3
339
40
27
11
19
1.87
24910--24940
12
2.6
12
100
0
62
22
25
0
51
1.48
31510--31549
15
2.6
16
92
4
64
15
7
12
65
1.47
31846--31948
52
2.0
50
83
9
127
25
9
14
50
1.73
35067--35100
12
2.9
12
95
4
61
17
52
17
11
1.73
35672--35715
22
2.0
22
100
0
88
36
18
9
36
1.82
38023--38062
15
2.6
16
92
4
64
15
7
12
65
1.47
42222--42434
58
3.9
55
86
10
298
43
3
17
35
1.67
42340--42434
50
1.9
50
95
0
163
41
3
16
38
1.65
42394--42508
37
3.1
37
94
0
203
43
2
13
40
1.58
42392--42452
18
3.3
18
67
13
52
42
3
13
40
1.60
42468--42656
50
3.8
50
91
0
279
42
3
14
40
1.61
43528--43564
19
2.0
19
89
5
58
64
0
0
35
0.94
45551--45644
45
2.2
43
90
7
147
38
22
5
34
1.77
46458--46525
19
3.6
18
75
15
57
51
1
2
44
1.25
52660--52989
43
7.8
43
89
4
501
41
26
11
20
1.86
52660--52989
84
3.9
84
97
0
615
41
26
11
20
1.86
53099--53143
2
22.5
2
95
0
81
48
2
0
48
1.13
67906--67982
28
2.8
28
81
0
100
36
24
19
19
1.95
68239--68550
35
8.9
35
80
6
335
26
21
19
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68239--68543
70
4.3
69
86
6
382
26
20
19
32
1.97

Tables:   1

The End!