Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015649.1 Corchorus olitorius cultivar O-4 contig15682, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 170942
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:848 original size:336 final size:335
Alignment explanation
Indices: 1--2439 Score: 2896
Period size: 336 Copynumber: 7.3 Consensus size: 335
* * * *
1 TTAATTTCTAATTAAATCAAAACCGGATTGAGATGCTACGTAAAAAACAAATCCTTCAATCCAAT
1 TTAATTTCTAATTAAATCGAAACAGGATTCAGATGCT-CGT-AAAAACAAATCCTTAAATCCAAT
* * *
66 GT-GCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAGAAATCATGCAA
64 GTGGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAA
* * * * *
130 AACTGAGCCGGGGCCACGATACGCGTTTTTAGCGAAAAACCTTGATA---CGTACACGATTTCGG
129 AACTGAGCCGGGCCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGG
* *
192 CTAAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCTCAATTTTTGGCCACGATACTCATAGAA
194 CTAAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCTCAATTTTCGGCCACCATACTCATAGAA
257 AATATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCG--TTTTTTTC-
259 AATATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTTTTTCT
*
319 AATTTTTCCGAA
324 ATTTTTTCCGAA
* * * * * * *
331 TTAATTCCTAATTGAATCGAAACATGATTCATATGTTAGGTAAAAAC-AATCCTTGAATCCAATG
1 TTAATTTCTAATTAAATCGAAACAGGATTCAGATGCT-CGTAAAAACAAATCCTTAAATCCAATG
* ** * *
395 TGGGTAAGATTTGGTTAGATGGATATAGATATTTCAATGAGACTTGGCGCCAAAAAATCATGTAA
65 TGGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCC-AAAAATCATGCAA
* * * * *
460 AACAGAGGCGGGACCC-CGAAACGCGTTTTTAGTC-AAAACTGTGATGGTTAGTACACGATTTCG
129 AACTGAGCCGGG-CCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCG
** * * * * * *
523 GCTAAAATTTTGCCAAAATTGACACGAAA-AATTTCTCTTCAATTTCCAGCCACCATATTCATAG
193 GCTAAAATTTTGTAAAAATTGACCCAAAAGAATTTTTC-TCAATTTTCGGCCACCATACTCATAG
* * * * * * *
587 AAAATATGTAACTCAACGTCAAATATATTGAAGGGCT-TCTCACGCTTCTAATATTGTTTTTTAT
257 AAAATATATAATTCAACATCAAAAAGATTGAAAGGCTAT-TCACGCTTCTAATATCGTTTTTT-T
*
651 TTCTATATTTTCCGAA
320 TTCTATTTTTTCCGAA
* * * *
667 TTAATTTCTAATTAAATCGACACCGGGTTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
1 TTAATTTCTAATTAAATCGAAACAGGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
* *
732 GGCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
66 GGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* *
797 CTTAG-CGAGGCCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCAGC
131 CTGAGCCG-GGCCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGGC
* * * *
861 TAAAATTTTGTTAAAATTGACCCAAAAGAATTTTTCTCAATCTTT-GACAACGATACTCATAGAA
195 TAAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCTCAAT-TTTCGGCCACCATACTCATAGAA
*
925 AATATATAATTCAATATC-AAAAGATTG-AAGGCTATTCACGCTTCTAATATCG---TTTTTTCT
259 AATATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTTTTTCT
985 ATTTTTTCCGAA
324 ATTTTTTCCGAA
* * * * * *
997 TTAA-TTCGTAATTGAATCGAAACATGATTCATATGTTGGTAAAAAC-AATCCTTAAATCCAATC
1 TTAATTTC-TAATTAAATCGAAACAGGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATG
* * ** *
1060 TGGGTAAGACTTGGTTAGATGGATATAGATATTTCAATGAGACTTGGCGCCAAAAATCATGCAAA
65 TGGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAA
* * * * * * *
1125 ACAGAGCTGGGACCC-CGAAATGCGTTTTTAGTCAAAAACTGTGATGGTTAGTACATGATTTCGG
130 ACTGAGCCGGG-CCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGG
** * * * * * * *
1189 CTAAAATTTTGCCAAAATTGACACGAAA-CATTTCTCTTCAATTTCCGGCCACCATATTCATAAA
194 CTAAAATTTTGTAAAAATTGACCCAAAAGAATTTTTC-TCAATTTTCGGCCACCATACTCATAGA
* * * * * *
1253 AAATATATAACTCAACGTCAAATATATTGAAGGGCT-TCTCACGCTTCTAATATTGTTTTTTTAT
258 AAATATATAATTCAACATCAAAAAGATTGAAAGGCTAT-TCACGCTTCTAATATCG-TTTTTT-T
1317 TTCTATTTTTTCCGAA
320 TTCTATTTTTTCCGAA
* **
1333 TTAATTTCTAATTAAATCGAAACCGGATTGTGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
1 TTAATTTCTAATTAAATCGAAACAGGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
* * *
1398 GGCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATAATGCAAAA
66 GGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* * * *
1463 CTGAGCCGGGGCTACGAAACGCGTTTATAGCCAAAAACCGTGATAGTTAGTACACGATTTTGGCT
131 CTGAGCCGGGCCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGGCT
* * * *
1528 AAAATTTTGTAAAAATTGACCCAAAATAATTTTTCCCAATTTTTGGCCACAATACTCATAGAAAA
196 AAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCTCAATTTTCGGCCACCATACTCATAGAAAA
* * * *
1593 TATATAATTCAATATCAAAAAGATTGAAAGTCTATTCACGCTTCTAAAATC---ATTTTTTCTAT
261 TATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTTTTTCTAT
1655 TTTTTCCGAA
326 TTTTTCCGAA
* * * * * *
1665 TTAATTCCTAATTGAATCGAAACATGATTCATATG-TTGCTAAAAACAAATCCTTAAATCAAATG
1 TTAATTTCTAATTAAATCGAAACAGGATTCAGATGCTCG-TAAAAACAAATCCTTAAATCCAATG
* ** * * *
1729 TGGTTAAGATTTGGTTAGATGGATATAGATATTTCAATGAGGCTTGGCGCCATAAATCATGTAAA
65 TGGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAA
* * * *
1794 ACTGAGCCGGGGCTC-CGGAACGCGTTTTTAGTC-AAAACCGTGAT-GATTAGTACACGATTTCA
130 ACTGAGCC-GGGCCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAG-TTAGTACACGATTTCG
** * * * * * *
1856 GCTAAAATTTTGCCAAAATTGACCCGAGA-AATTTCTCCTCAA-TTTCCGCCACCATATTCATAA
193 GCTAAAATTTTGTAAAAATTGACCCAAAAGAATTT-TTCTCAATTTTCGGCCACCATACTCATAG
* * * *
1919 AAAATATAT-ACTCAACGTCAAAAATATTGAAAGGCT-TCTCACGCTTCTAATATTGTTTTTTTA
257 AAAATATATAATTCAACATCAAAAAGATTGAAAGGCTAT-TCACGCTTCTAATATCG-TTTTTT-
1982 TTTCTATTTTTTCCGAA
319 TTTCTATTTTTTCCGAA
* * *
1999 TTAATTTCTAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGA
1 TTAATTTCTAATTAAATCGAAACAGGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
* * * * *
2064 CGTTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATAATGCAAAA
66 GGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* * * *
2129 CTGAGTCGGGGCTACGAAACGCGTTTTTAGCCAAAAAACCGTGATAGTTAGTACACGATTTTGGC
131 CTGAGCCGGGCCCACGAAACGCGTTTTTAGCC-AAAAACCGTGATAGTTAGTACACGATTTCGGC
* * * * *
2194 TAAAATTTTGTAAAAATTGACCCAAAATAATTTTTCCCAATTTTTGGCCACGATGCTCATAGAAA
195 TAAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCTCAATTTTCGGCCACCATACTCATAGAAA
2259 ATATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTTTTTCTA
260 ATATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTTTTTCTA
2324 TTTTTTCCGAA
325 TTTTTTCCGAA
* * * * * * *
2335 TTAATTCCTAATTGAATCGAAATATGATTCATATGTTGGTAAAAACAAATCCTTAAATCCAATGT
1 TTAATTTCTAATTAAATCGAAACAGGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
* * ** *
2400 GGATAAGATTTGGTTAAATGGATATAGATATTTTAATGAG
66 GGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAG
2440 ATATTAGTAC
Statistics
Matches: 1762, Mismatches: 291, Indels: 106
0.82 0.13 0.05
Matches are distributed among these distances:
328 26 0.01
329 278 0.16
330 160 0.09
331 91 0.05
332 254 0.14
333 12 0.01
334 178 0.10
335 61 0.03
336 394 0.22
337 260 0.15
338 47 0.03
339 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (335 bp):
TTAATTTCTAATTAAATCGAAACAGGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
GGCTAAGATTTGGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
CTGAGCCGGGCCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGGCT
AAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCTCAATTTTCGGCCACCATACTCATAGAAAA
TATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTTTTTCTAT
TTTTTCCGAA
Found at i:1499 original size:666 final size:665
Alignment explanation
Indices: 1--2440 Score: 3995
Period size: 666 Copynumber: 3.7 Consensus size: 665
* *
1 TTAATTTCTAATTAAATCAAAACCGGATTGAGATGCTACGTAAAAAACAAATCCTTCAATCCAAT
1 TTAATTTCTAATTAAATCGAAACCGGATTGAGATGCT-CGT-AAAAACAAATCCTTAAATCCAAT
* *
66 GT-GCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAGAAATCATGCAA
64 GTGGCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATAATGCAA
* * * *
130 AACTGAGCCGGGGCCACGATACGCGTTTTTAGCGAAAAACCTTGATA---CGTACACGATTTCGG
129 AACTGAGCCGGGGCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGG
*
192 CTAAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCTCAATTTTTGGCCACGATACTCATAGAA
194 CTAAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCCCAATTTTTGGCCACGATACTCATAGAA
*
257 AATATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTT-TCAA
259 AATATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTTCT-AT
321 TTTTTCCGAATTAATTCCTAATTGAATCGAAACATGATTCATATGTTAGGTAAAAAC-AATCCTT
323 TTTTTCCGAATTAATTCCTAATTGAATCGAAACATGATTCATATGTT-GGTAAAAACAAATCCTT
*
385 GAATCCAATGTGGGTAAGATTTGGTTAGATGGATATAGATATTTCAATGAGACTTGGCGCCAAAA
387 AAATCCAATGTGGGTAAGATTTGGTTAGATGGATATAGATATTTCAATGAGACTTGGCGCC-AAA
450 AATCATGTAAAACAGAGGCGGGACCCCGAAACGCGTTTTTAGTCAAAACTGTGATGGTTAGTACA
451 AATCATGTAAAACAGA-GCGGGACCCCGAAACGCGTTTTTAGTCAAAACTGTGATGGTTAGTACA
515 CGATTTCGGCTAAAATTTTGCCAAAATTGACACGAAAAATTTCTCTTCAATTTCCAGCCACCATA
515 CGATTTCGGCTAAAATTTTGCCAAAATTGACACG-AAAATTTCTCTTCAATTTCC-GCCACCATA
* *
580 TTCATAGAAAATATGTAACTCAACGTCAAATATATTGAAGGGCTTCTCACGCTTCTAATATTG-T
578 TTCATAAAAAATATATAACTCAACGTCAAATATATTGAAGGGCTTCTCACGCTTCTAATATTGTT
*
644 TTTTTATTTCTATATTTTCCGAA
643 TTTTTATTTCTATTTTTTCCGAA
* *
667 TTAATTTCTAATTAAATCGACACCGGGTTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
1 TTAATTTCTAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
*
732 GGCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
66 GGCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATAATGCAAAA
* * *
797 CTTAG-CGAGGCCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCAGC
131 CTGAGCCG-GGGCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGGC
* * * * *
861 TAAAATTTTGTTAAAATTGACCCAAAAGAATTTTTCTCAATCTTTGACAACGATACTCATAGAAA
195 TAAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCCCAATTTTTGGCCACGATACTCATAGAAA
*
926 ATATATAATTCAATATC-AAAAGATTG-AAGGCTATTCACGCTTCTAATATCGTTTTTTCTATTT
260 ATATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTTCTATTT
*
989 TTTCCGAATTAATTCGTAATTGAATCGAAACATGATTCATATGTTGGTAAAAAC-AATCCTTAAA
325 TTTCCGAATTAATTCCTAATTGAATCGAAACATGATTCATATGTTGGTAAAAACAAATCCTTAAA
* *
1053 TCCAATCTGGGTAAGACTTGGTTAGATGGATATAGATATTTCAATGAGACTTGGCGCCAAAAATC
390 TCCAATGTGGGTAAGATTTGGTTAGATGGATATAGATATTTCAATGAGACTTGGCGCCAAAAATC
* * *
1118 ATGCAAAACAGAGCTGGGACCCCGAAATGCGTTTTTAGTCAAAAACTGTGATGGTTAGTACATGA
455 ATGTAAAACAGAGC-GGGACCCCGAAACGCGTTTTTAGTC-AAAACTGTGATGGTTAGTACACGA
1183 TTTCGGCTAAAATTTTGCCAAAATTGACACGAAACATTTCTCTTCAATTTCCGGCCACCATATTC
518 TTTCGGCTAAAATTTTGCCAAAATTGACACGAAA-ATTTCTCTTCAATTTCC-GCCACCATATTC
1248 ATAAAAAATATATAACTCAACGTCAAATATATTGAAGGGCTTCTCACGCTTCTAATATTGTTTTT
581 ATAAAAAATATATAACTCAACGTCAAATATATTGAAGGGCTTCTCACGCTTCTAATATTGTTTTT
1313 TTATTTCTATTTTTTCCGAA
646 TTATTTCTATTTTTTCCGAA
*
1333 TTAATTTCTAATTAAATCGAAACCGGATTGTGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
1 TTAATTTCTAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
1398 GGCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATAATGCAAAA
66 GGCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATAATGCAAAA
* * *
1463 CTGAGCCGGGGCTACGAAACGCGTTTATAGCCAAAAACCGTGATAGTTAGTACACGATTTTGGCT
131 CTGAGCCGGGGCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGGCT
* *
1528 AAAATTTTGTAAAAATTGACCCAAAATAATTTTTCCCAATTTTTGGCCACAATACTCATAGAAAA
196 AAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCCCAATTTTTGGCCACGATACTCATAGAAAA
* * * *
1593 TATATAATTCAATATCAAAAAGATTGAAAGTCTATTCACGCTTCTAAAATCATTTTTTCTATTTT
261 TATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTTCTATTTT
*
1658 TTCCGAATTAATTCCTAATTGAATCGAAACATGATTCATATGTTGCTAAAAACAAATCCTTAAAT
326 TTCCGAATTAATTCCTAATTGAATCGAAACATGATTCATATGTTGGTAAAAACAAATCCTTAAAT
* * * *
1723 CAAATGTGGTTAAGATTTGGTTAGATGGATATAGATATTTCAATGAGGCTTGGCGCCATAAATCA
391 CCAATGTGGGTAAGATTTGGTTAGATGGATATAGATATTTCAATGAGACTTGGCGCCAAAAATCA
* * * * * *
1788 TGTAAAACTGAGCCGGGGCTCCGGAACGCGTTTTTAGTCAAAACCGTGATGATTAGTACACGATT
456 TGTAAAACAGAG-CGGGACCCCGAAACGCGTTTTTAGTCAAAACTGTGATGGTTAGTACACGATT
* * *
1853 TCAGCTAAAATTTTGCCAAAATTGACCCGAGAAATTTCTCCTCAATTTCCGCCACCATATTCATA
520 TCGGCTAAAATTTTGCCAAAATTGACACGA-AAATTTCTCTTCAATTTCCGCCACCATATTCATA
* *
1918 AAAAATATAT-ACTCAACGTCAAAAATATTGAAAGGCTTCTCACGCTTCTAATATTGTTTTTTTA
584 AAAAATATATAACTCAACGTCAAATATATTGAAGGGCTTCTCACGCTTCTAATATTGTTTTTTTA
1982 TTTCTATTTTTTCCGAA
649 TTTCTATTTTTTCCGAA
*
1999 TTAATTTCTAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGA
1 TTAATTTCTAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
* *
2064 CGTTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATAATGCAAAA
66 GGCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATAATGCAAAA
* * *
2129 CTGAGTCGGGGCTACGAAACGCGTTTTTAGCCAAAAAACCGTGATAGTTAGTACACGATTTTGGC
131 CTGAGCCGGGGCCACGAAACGCGTTTTTAGCC-AAAAACCGTGATAGTTAGTACACGATTTCGGC
* *
2194 TAAAATTTTGTAAAAATTGACCCAAAATAATTTTTCCCAATTTTTGGCCACGATGCTCATAGAAA
195 TAAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCCCAATTTTTGGCCACGATACTCATAGAAA
2259 ATATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTTTTTCTA
260 ATATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCG---TTTTTTCTA
*
2324 TTTTTTCCGAATTAATTCCTAATTGAATCGAAATATGATTCATATGTTGGTAAAAACAAATCCTT
322 TTTTTTCCGAATTAATTCCTAATTGAATCGAAACATGATTCATATGTTGGTAAAAACAAATCCTT
* * *
2389 AAATCCAATGTGGATAAGATTTGGTTAAATGGATATAGATATTTTAATGAGA
387 AAATCCAATGTGGGTAAGATTTGGTTAGATGGATATAGATATTTCAATGAGA
2441 TATTAGTACT
Statistics
Matches: 1664, Mismatches: 90, Indels: 36
0.93 0.05 0.02
Matches are distributed among these distances:
663 2 0.00
664 71 0.04
665 318 0.19
666 616 0.37
667 190 0.11
668 244 0.15
669 103 0.06
670 120 0.07
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (665 bp):
TTAATTTCTAATTAAATCGAAACCGGATTGAGATGCTCGTAAAAACAAATCCTTAAATCCAATGT
GGCTGAGATTTTGTTAGATAAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATAATGCAAAA
CTGAGCCGGGGCCACGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCGGCT
AAAATTTTGTAAAAATTGACCCAAAAGAATTTTTCCCAATTTTTGGCCACGATACTCATAGAAAA
TATATAATTCAACATCAAAAAGATTGAAAGGCTATTCACGCTTCTAATATCGTTTTTTCTATTTT
TTCCGAATTAATTCCTAATTGAATCGAAACATGATTCATATGTTGGTAAAAACAAATCCTTAAAT
CCAATGTGGGTAAGATTTGGTTAGATGGATATAGATATTTCAATGAGACTTGGCGCCAAAAATCA
TGTAAAACAGAGCGGGACCCCGAAACGCGTTTTTAGTCAAAACTGTGATGGTTAGTACACGATTT
CGGCTAAAATTTTGCCAAAATTGACACGAAAATTTCTCTTCAATTTCCGCCACCATATTCATAAA
AAATATATAACTCAACGTCAAATATATTGAAGGGCTTCTCACGCTTCTAATATTGTTTTTTTATT
TCTATTTTTTCCGAA
Found at i:2485 original size:63 final size:63
Alignment explanation
Indices: 2386--2511 Score: 243
Period size: 63 Copynumber: 2.0 Consensus size: 63
2376 AAAACAAATC
2386 CTTAAATCCAATGTGGATAAGATTTGGTTAAATGGATATAGATATTTTAATGAGATATTAGTA
1 CTTAAATCCAATGTGGATAAGATTTGGTTAAATGGATATAGATATTTTAATGAGATATTAGTA
*
2449 CTTAAATTCAATGTGGATAAGATTTGGTTAAATGGATATAGATATTTTAATGAGATATTAGTA
1 CTTAAATCCAATGTGGATAAGATTTGGTTAAATGGATATAGATATTTTAATGAGATATTAGTA
2512 TTTTAGTATT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.38, C:0.04, G:0.19, T:0.39
Consensus pattern (63 bp):
CTTAAATCCAATGTGGATAAGATTTGGTTAAATGGATATAGATATTTTAATGAGATATTAGTA
Found at i:2498 original size:19 final size:20
Alignment explanation
Indices: 2476--2516 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
2466 TAAGATTTGG
2476 TTAAATG-GATA-TAGATATT
1 TTAAATGAGATATTAG-TATT
2495 TT-AATGAGATATTAGTATT
1 TTAAATGAGATATTAGTATT
2514 TTA
1 TTA
2517 GTATTTTAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
18 4 0.21
19 12 0.63
20 3 0.16
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.46
Consensus pattern (20 bp):
TTAAATGAGATATTAGTATT
Found at i:16339 original size:2 final size:2
Alignment explanation
Indices: 16332--16375 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
16322 AATCTTATGA
16332 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16374 AT
1 AT
16376 TTGCTAAGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21838 original size:19 final size:18
Alignment explanation
Indices: 21792--21838 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
21782 CCGCTGTTAG
*
21792 TTTTCTTGTTTCCATTGA
1 TTTTCTTTTTTCCATTGA
*
21810 TTTTCCTTTTTCC-TTGTA
1 TTTTCTTTTTTCCATTG-A
21828 TCTTTCTTTTT
1 T-TTTCTTTTT
21839 GCCTCTGTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 3 0.12
18 13 0.54
19 8 0.33
ACGTcount: A:0.06, C:0.19, G:0.06, T:0.68
Consensus pattern (18 bp):
TTTTCTTTTTTCCATTGA
Found at i:22921 original size:26 final size:27
Alignment explanation
Indices: 22892--22942 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
22882 TCAATTACTC
22892 CCTC-CGTTCCTTTTTAATTGTCCCAA
1 CCTCTCGTTCCTTTTTAATTGTCCCAA
*
22918 CCTCTTGTTCCTTTTTAATTGTCCC
1 CCTCTCGTTCCTTTTTAATTGTCCC
22943 TCTCTATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 4 0.17
27 19 0.83
ACGTcount: A:0.12, C:0.33, G:0.08, T:0.47
Consensus pattern (27 bp):
CCTCTCGTTCCTTTTTAATTGTCCCAA
Found at i:49252 original size:37 final size:37
Alignment explanation
Indices: 49211--49285 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
49201 CAGTTATCTT
49211 GCGCTTAATGGTTAGATGTCTGTCATCTAAACTTCAA
1 GCGCTTAATGGTTAGATGTCTGTCATCTAAACTTCAA
49248 GCGCTTAATGGTTAGATGTCTGTCATCTAAACTTCAA
1 GCGCTTAATGGTTAGATGTCTGTCATCTAAACTTCAA
49285 G
1 G
49286 AGCAATGGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (37 bp):
GCGCTTAATGGTTAGATGTCTGTCATCTAAACTTCAA
Found at i:53738 original size:13 final size:13
Alignment explanation
Indices: 53720--53745 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
53710 TTCTGTAAAT
53720 CAATATAAAAGGG
1 CAATATAAAAGGG
53733 CAATATAAAAGGG
1 CAATATAAAAGGG
53746 TTGCAATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.23, T:0.15
Consensus pattern (13 bp):
CAATATAAAAGGG
Found at i:59032 original size:18 final size:18
Alignment explanation
Indices: 59006--59041 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
58996 CTAGTCTGCT
*
59006 GGACCAATCGTGTAACAA
1 GGACAAATCGTGTAACAA
59024 GGACAAATCGTGTAACAA
1 GGACAAATCGTGTAACAA
59042 CACGTTATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.17
Consensus pattern (18 bp):
GGACAAATCGTGTAACAA
Found at i:65228 original size:28 final size:28
Alignment explanation
Indices: 65188--65245 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
65178 TTCTTGAAGC
65188 AATATCATTTTAGTTTGAAAGATTGGTA
1 AATATCATTTTAGTTTGAAAGATTGGTA
*
65216 AATATCATTTTAGTTTGGAAGATTGGTA
1 AATATCATTTTAGTTTGAAAGATTGGTA
65244 AA
1 AA
65246 CTAAGAAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.41
Consensus pattern (28 bp):
AATATCATTTTAGTTTGAAAGATTGGTA
Found at i:70794 original size:24 final size:24
Alignment explanation
Indices: 70767--70814 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
70757 ATTACTTTCT
*
70767 TGTTTCTCCCCAAGCACTCAGCTA
1 TGTTTCTCCCCAAACACTCAGCTA
*
70791 TGTTTCTCCCCAAACTCTCAGCTA
1 TGTTTCTCCCCAAACACTCAGCTA
70815 GCATGATAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.38, G:0.10, T:0.31
Consensus pattern (24 bp):
TGTTTCTCCCCAAACACTCAGCTA
Found at i:73468 original size:3 final size:3
Alignment explanation
Indices: 73460--73486 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
73450 TTCTTATATT
73460 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
73487 CTGATCCCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:80084 original size:58 final size:57
Alignment explanation
Indices: 79995--80108 Score: 210
Period size: 58 Copynumber: 2.0 Consensus size: 57
79985 TTGTGTAGTT
79995 GACATAAGTCCATTTTTTGAATTAATTAAGTTTTAAATATTTCAATCTAGTCACTAG
1 GACATAAGTCCATTTTTTGAATTAATTAAGTTTTAAATATTTCAATCTAGTCACTAG
*
80052 GACATATGTCCATTTTTTTGAATTAATTAAGTTTTAAATATTTCAATCTAGTCACTA
1 GACATAAGTCCA-TTTTTTGAATTAATTAAGTTTTAAATATTTCAATCTAGTCACTA
80109 AAGGACACAT
Statistics
Matches: 55, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
57 11 0.20
58 44 0.80
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (57 bp):
GACATAAGTCCATTTTTTGAATTAATTAAGTTTTAAATATTTCAATCTAGTCACTAG
Found at i:81936 original size:2 final size:2
Alignment explanation
Indices: 81929--81970 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
81919 TGGCTTTTAT
81929 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
81971 CTAAACCTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:85248 original size:15 final size:15
Alignment explanation
Indices: 85228--85257 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
85218 CATGCATACT
85228 CAATGAAATTAAGAA
1 CAATGAAATTAAGAA
85243 CAATGAAATTAAGAA
1 CAATGAAATTAAGAA
85258 AAGCATTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (15 bp):
CAATGAAATTAAGAA
Found at i:109122 original size:2 final size:2
Alignment explanation
Indices: 109115--109145 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
109105 ATTTCTGATT
109115 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
109146 GTTTTTCCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:110732 original size:20 final size:22
Alignment explanation
Indices: 110707--110746 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
110697 GAAACTACCC
110707 CACAAG-ACA-ATGTATACACA
1 CACAAGTACATATGTATACACA
110727 CACAAGTACATATGTATACA
1 CACAAGTACATATGTATACA
110747 TATATTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 3 0.17
22 9 0.50
ACGTcount: A:0.47, C:0.23, G:0.10, T:0.20
Consensus pattern (22 bp):
CACAAGTACATATGTATACACA
Found at i:120458 original size:75 final size:75
Alignment explanation
Indices: 120374--120523 Score: 212
Period size: 75 Copynumber: 2.0 Consensus size: 75
120364 TTAACTAAAT
** * **
120374 TGAGAAAAGACCAAAACGGGGCGAAAA-AGTTCTCCCACATTAAAAGTTGATGGGAGCTATTGGT
1 TGAGAAAAGACCAAAACGGAACGAAAAGA-TTCTCCCACATTAAAAGTTGATGGGAACTATCAGT
120438 AATTTCGAGAG
65 AATTTCGAGAG
* *
120449 TGAGAAAAGACCAAAACGGAACGAAAAGATTCTCCCACGTTAAAAGTTGATTGGAACTATCAGTA
1 TGAGAAAAGACCAAAACGGAACGAAAAGATTCTCCCACATTAAAAGTTGATGGGAACTATCAGTA
*
120514 ATTTCTAGAG
66 ATTTCGAGAG
120524 GGTATTCAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
75 65 0.98
76 1 0.02
ACGTcount: A:0.39, C:0.15, G:0.23, T:0.22
Consensus pattern (75 bp):
TGAGAAAAGACCAAAACGGAACGAAAAGATTCTCCCACATTAAAAGTTGATGGGAACTATCAGTA
ATTTCGAGAG
Found at i:123297 original size:90 final size:90
Alignment explanation
Indices: 123082--123301 Score: 248
Period size: 90 Copynumber: 2.4 Consensus size: 90
123072 ATTGTTTTAA
* * * * *
123082 GCTCTTCATCAGGTTCATCATCTCCATTCTCATCCTTTAGTATCAAGCTGAGGACACGGCTGGAA
1 GCTCTTCATCAAGTTCATCTTCTCCATTCTCATCCCTTAGTATCAAGCTGAGCACACGGCTGAAA
*
123147 AGTCGCAATTTCATGGCTATTTTAT
66 AGTCGCAATTTCATGGCTATCTTAT
* * * *
123172 GCTCTTCATCAAGTTCTTCTTCTGCATTATCATCCCTTAGTATCAAGTTGAGCACACGGCTGAAA
1 GCTCTTCATCAAGTTCATCTTCTCCATTCTCATCCCTTAGTATCAAGCTGAGCACACGGCTGAAA
* * *
123237 AGTCTG-ATTTTCATGGCTCTCTTGT
66 AGTC-GCAATTTCATGGCTATCTTAT
* * *
123262 GCT-TTCTATCAAGTTGATCGTT-TCCAATCTGATCCCTTAG
1 GCTCTTC-ATCAAGTTCATC-TTCTCCATTCTCATCCCTTAG
123302 CATGGAGTTC
Statistics
Matches: 108, Mismatches: 19, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
89 3 0.03
90 102 0.94
91 3 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.37
Consensus pattern (90 bp):
GCTCTTCATCAAGTTCATCTTCTCCATTCTCATCCCTTAGTATCAAGCTGAGCACACGGCTGAAA
AGTCGCAATTTCATGGCTATCTTAT
Found at i:128459 original size:30 final size:30
Alignment explanation
Indices: 128398--128461 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
128388 TTATGAAGGC
*
128398 ATGATCTCTCTATTGTTACTTGAAAGGCAA
1 ATGATCTCTCTATTGTTACTTCAAAGGCAA
* *
128428 ATGATCTCTCTTTTGTTA-TTACAAAGTCAA
1 ATGATCTCTCTATTGTTACTT-CAAAGGCAA
128458 ATGA
1 ATGA
128462 GATGGATAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 28 0.93
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (30 bp):
ATGATCTCTCTATTGTTACTTCAAAGGCAA
Found at i:130138 original size:16 final size:15
Alignment explanation
Indices: 130117--130146 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
130107 ATTAACTATG
130117 AACTCAAACATATATA
1 AACTCAAAC-TATATA
130133 AACTCAAACTATAT
1 AACTCAAACTATAT
130147 GATTTCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (15 bp):
AACTCAAACTATATA
Found at i:135923 original size:41 final size:41
Alignment explanation
Indices: 135878--136003 Score: 216
Period size: 41 Copynumber: 3.1 Consensus size: 41
135868 CTTTCTTTGT
135878 GTGATTTAGACATCATAATACTAAAGCATGGATGTTTATGC
1 GTGATTTAGACATCATAATACTAAAGCATGGATGTTTATGC
* *
135919 GTGATTTAGACATTATAATACTAAAGCATGGGTGTTTATGC
1 GTGATTTAGACATCATAATACTAAAGCATGGATGTTTATGC
* *
135960 GTGATTTAGACATCATAATACTAAAACATGGATGTTTGTGC
1 GTGATTTAGACATCATAATACTAAAGCATGGATGTTTATGC
136001 GTG
1 GTG
136004 TCATATTCTT
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 79 1.00
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.35
Consensus pattern (41 bp):
GTGATTTAGACATCATAATACTAAAGCATGGATGTTTATGC
Found at i:144821 original size:28 final size:28
Alignment explanation
Indices: 144790--144844 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
144780 ACTGACTTAG
144790 TTTACCAATCTTCCAAACTAAAATGATA
1 TTTACCAATCTTCCAAACTAAAATGATA
*
144818 TTTACCAATCTTTCAAACTAAAATGAT
1 TTTACCAATCTTCCAAACTAAAATGAT
144845 GTTGCTTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.42, C:0.20, G:0.04, T:0.35
Consensus pattern (28 bp):
TTTACCAATCTTCCAAACTAAAATGATA
Found at i:149053 original size:13 final size:13
Alignment explanation
Indices: 149035--149064 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
149025 CAAATTTCCC
149035 TGTAACTCAATTT
1 TGTAACTCAATTT
149048 TGTAACTCAATTT
1 TGTAACTCAATTT
149061 TGTA
1 TGTA
149065 TAGGAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (13 bp):
TGTAACTCAATTT
Found at i:152553 original size:24 final size:24
Alignment explanation
Indices: 152525--152583 Score: 118
Period size: 24 Copynumber: 2.5 Consensus size: 24
152515 TGAGAGGGGA
152525 CGTGGCCGTAGTACCTCCACTGGG
1 CGTGGCCGTAGTACCTCCACTGGG
152549 CGTGGCCGTAGTACCTCCACTGGG
1 CGTGGCCGTAGTACCTCCACTGGG
152573 CGTGGCCGTAG
1 CGTGGCCGTAG
152584 CTCATCGTCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.12, C:0.32, G:0.36, T:0.20
Consensus pattern (24 bp):
CGTGGCCGTAGTACCTCCACTGGG
Found at i:153357 original size:32 final size:33
Alignment explanation
Indices: 153316--153381 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
153306 GAGACAAGAT
*
153316 TGGGAGGCTC-AAAAAAATGTCCTGGGGTAGTA
1 TGGGAGGCTCAAAAAAAATGTCATGGGGTAGTA
153348 TGGGAGGCTCAAAAAAAATGTCATGGGGTAGTA
1 TGGGAGGCTCAAAAAAAATGTCATGGGGTAGTA
153381 T
1 T
153382 TGATTTTATA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 10 0.31
33 22 0.69
ACGTcount: A:0.33, C:0.11, G:0.33, T:0.23
Consensus pattern (33 bp):
TGGGAGGCTCAAAAAAAATGTCATGGGGTAGTA
Found at i:153514 original size:10 final size:10
Alignment explanation
Indices: 153496--153538 Score: 50
Period size: 10 Copynumber: 4.3 Consensus size: 10
153486 ATAAGTATAT
153496 TCCATAAAAA
1 TCCATAAAAA
*
153506 TCCAAAAAAA
1 TCCATAAAAA
** *
153516 GACATAAACA
1 TCCATAAAAA
153526 TCCATAAAAA
1 TCCATAAAAA
153536 TCC
1 TCC
153539 CAAAATATAA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.58, C:0.23, G:0.02, T:0.16
Consensus pattern (10 bp):
TCCATAAAAA
Found at i:155690 original size:27 final size:27
Alignment explanation
Indices: 155650--155706 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
155640 CAGGCTCCCT
* *
155650 CTCCATATAGATCCAAGCAGCCTCAGC
1 CTCCATATACATCCAAGCAGCCTCAAC
* *
155677 CTCCCTATACATCCGAGCAGCCTCAAC
1 CTCCATATACATCCAAGCAGCCTCAAC
155704 CTC
1 CTC
155707 TTTATCCCGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.42, G:0.12, T:0.19
Consensus pattern (27 bp):
CTCCATATACATCCAAGCAGCCTCAAC
Found at i:155864 original size:26 final size:26
Alignment explanation
Indices: 155816--155865 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
155806 AGACTGAATA
* **
155816 AAAAATAATAATTAATTTTAGTAAAT
1 AAAAATAATAAGTAATTACAGTAAAT
*
155842 AAAAATTATAAGTAATTACAGTAA
1 AAAAATAATAAGTAATTACAGTAA
155866 TATATAATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (26 bp):
AAAAATAATAAGTAATTACAGTAAAT
Found at i:158110 original size:333 final size:327
Alignment explanation
Indices: 156916--162502 Score: 5022
Period size: 332 Copynumber: 16.9 Consensus size: 327
156906 TAGTTATTTG
* ** * * ** * *
156916 GCCGAAATCGTGTACCATCATAGTTTTTTTTTGGCTAAAAACGTGTTTCAGGACCCCGGGTCAGT
1 GCCGAAATCGTGTACTATCAT-GCATTTTTTTGGCTAAAAACGCG-TTCCGGGTCCTGGCTCAGT
* * * * *
156981 TTTGCATGATTTTTGGTGGCAAAAATCCTTGAAATATCTTTATTTATCTAACCAAATCTTAGCCA
64 TTTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCA
* * * *
157046 CACTTGATTTAAGGATGTGTTTTTGCGAGCATCTGAATCATGTTTCGTTTTAATTAGAAATTAAT
129 CA-TTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAAT
* * * * * * *
157111 TTGAAAAAAAAAGGAAAAACGATATTAGAAGCATGAGAAGCCCTTCAATCTTTTTAGCGTTGAAT
193 TTG-AAAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTGAAT
* * *
157176 TATATATTTTTTATGAGTA-TTGGGCTAAAAATTGA-GAAAAGTATTTCGGGTTAATTTTTGCAA
257 TATATATTTTTTATGAGTATTTTGGC-AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAA
*
157239 AATTTTC
321 AATTTTA
** * * *
157246 GCCGAAATCGTGTACTATCATTGTTTTTTTTTTTGGCTAAAATCGCATTCCGGGGTCCTGGGTCA
1 GCCGAAATCGTGTACTATCA-TG--CATTTTTTTGGCTAAAAACGCGTTCC-GGGTCCTGGCTCA
* ** * *
157311 ATTTTGCATGATTTTTGGCACCAAGACTCCTTAAAATATATCTATATTCATCTAACCAAATCTCA
62 GTTTTGCATGATTTTTGGTGCCAAGACTCCTT-GAA-ATATCTATATTCATCTAACCAAATCTTA
*** * * *
157376 GCCACATTGTATTTAAGGATTTGTTTTTACGAATTTCTAAATCATGTTTTGATTTAATTAGAAAT
125 GCCACATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAAT
* ** * * *
157441 TAATTTGGAAAGAAAATAAGG-AATACGATATTTGAAGCGTGAAAAAGGCTTTC-AT-ATTTTGG
189 TAATTT-G-AA-AAAAT-AGGAAAAACGATATTAAAAGCGTG-AAAAGTCCTTCAATCTTTTTGG
* * * * *
157503 CATTGAATTATATATTTTTAATGAGTATTTTCGCTAGAAATTGAGGAAAAATTTTTCGGGTCAAA
249 CATTGAATTATATATTTTTTATGAGTATTTTGGC-AAAAATTGAGGAAAAATATTTCGGGTCAAT
*
157568 TTTTGGAAAATTTTA
313 TTTTGCAAAATTTTA
* * ** * *
157583 GCTGAAAATCGTGTACTAACCAT-CACGGTTTTCGGCTAAAAACGCGTTCCGGGATCC-GACTCA
1 GCCG-AAATCGTGTACT-ATCATGCA-TTTTTTTGGCTAAAAACGCGTTCCGGG-TCCTGGCTCA
* *
157646 GTTTTGCATGATTTTTGGTGCCAAGACTCCTTAAAAATATCTATGTTCATCTAACCAAATCTTAG
62 GTTTTGCATGATTTTTGGTGCCAAGACTCCTT-GAAATATCTATATTCATCTAACCAAATCTTAG
* * * * *
157711 CCACATTAGATTTAAGAATTTGTTTTTATGAGCATCTAAATCTTATTTCGATTTAATTAAAAATT
126 CCACATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATT
* * * * *
157776 AATTTGAAAAAATAGGAAAAACGATATTAGAAGCGTGAGAAGCCCTTCAATCTTTTTAGCGTTGA
190 AATTTGAAAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTGA
* * *
157841 ATTATATATTTTTTATGAGTATTGTGGCTTAAAATTG-GGAAAAATATTTCGGGTTAATTTTTGC
255 ATTATATATTTTTTATGAGTATTTTGGC-AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGC
*
157905 AAAATTTTC
319 AAAATTTTA
** * *
157914 GCCGAAATCGTGTACTATCATTGTTTTTTTTTTGGCTAAAATCGCGTTCCGAGGTCCTGGGTCAG
1 GCCGAAATCGTGTACTATCA-TG-CATTTTTTTGGCTAAAAACGCGTTCCG-GGTCCTGGCTCAG
* ** * *
157979 TTTTGCATGATTTTCGGCACCAAGACTCCTTAAAATATATCTATATTCATCTAACCAAATCTCAG
63 TTTTGCATGATTTTTGGTGCCAAGACTCCTT-GAA-ATATCTATATTCATCTAACCAAATCTTAG
* *** * * *
158044 CCACATTGTATTTAAGGATTTATTTTTACGAATTTCTAAATCATGTTTTGATTTAATTAGAAATT
126 CCACATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATT
** * * * * *
158109 AATTTGGAAAGAGAATAAGG-AAAACGATATTTGAAGCATGAAAAAGGCTTTCATTTTTTTTGGC
190 AATTT-GAAA-A-AAT-AGGAAAAACGATATTAAAAGCGTG-AAAAGTCCTTCAATCTTTTTGGC
* * * *
158173 ATTGAATTATATATTTTTTATGAGTATTTTCGCTAGAAATCGAGGAAAAATTTTTCGGGTCAATT
250 ATTGAATTATATATTTTTTATGAGTATTTTGGC-AAAAATTGAGGAAAAATATTTCGGGTCAATT
*
158238 TTTGGAAAATTTTA
314 TTTGCAAAATTTTA
* * ** ** *
158252 GCTGAAAATCGTGTACTAACCAT-CACGGTTTTCAGCTAAAAACGCGTTCCGGGATCC-GACTCA
1 GCCG-AAATCGTGTACT-ATCATGCA-TTTTTTTGGCTAAAAACGCGTTCCGGG-TCCTGGCTCA
* * *
158315 TTTTTGCATGATTTTTGGTGCCAAGATTTCTTGAAATATCTATATTCATCTAACCAAATCTTAGC
62 GTTTTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGC
* * * *
158380 CACATTAGATTTAAGAATTTGTTTTTATGAGCATCTGAATCTTATTTCGATTTAATTAAAAATTA
127 CACATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTA
* * ** * * * * * * ** *
158445 A-ATCAGAAAAATAATAAAAACTATATTAAAAGTGTGAAAAGTTCTCCAATGTTCTTATCATTAA
191 ATTTGA-AAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTGA
* * * * * * **
158509 ATTATATATATATTACGAGTATTTTAGCCAAAAATTGTCGGAAAAATTTTTTTGGTCAATTTTTG
255 ATTATATATTTTTTATGAGTATTTT-GGCAAAAATTG-AGGAAAAATATTTCGGGTCAATTTTTG
*
158574 AAAAATTTTA
318 CAAAATTTTA
* * * * * * *
158584 GCCGAAATCGTGTACAAACCAT-CATGGTTTTTTGGCTAAAAACGTGTTTCGAGGCCCAGGCTTA
1 GCCGAAATCGTGTAC-TATCATGCAT--TTTTTTGGCTAAAAACGCGTTCCG-GGTCCTGGCTCA
* * * * *
158648 GTTTTGCATGATTTGTT-GCGCCGAGACTTCTTGAAATATCTATATTCATCTAATCAAATCTCAG
62 GTTTTGCATGATTT-TTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAG
* * *
158712 CCACATTGAATTTAAGGATTTGTTTTTACGAGCCTATGAATCTTGTTTCGATTTAACTAGAAATT
126 CCACATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATT
* * * **
158777 AA-TTCAGAAAAATATGAAAAACGATATTAAAAGCGTGAAAAGT-CTATCAGT-TTTTGTGGTGT
190 AATTTGA-AAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGTCCT-TCAATCTTTT-TGGCAT
* * *
158839 TGAATTATATATATTTTATGAGTGTTGTGGCTAAAAATTGA-GACAAAATATTTCGGGTCAATTT
252 TGAATTATATATTTTTTATGAGTATTTTGGC-AAAAATTGAGGA-AAAATATTTCGGGTCAATTT
*
158903 TTACAAAATTTTA
315 TTGCAAAATTTTA
* * * * * * * *
158916 GTCGAAATCGTGTACCATCA--CAGTTTTTTGGCTAAAAACGTGTTTCGGGGCCCAAGG-TCAGC
1 GCCGAAATCGTGTACTATCATGCATTTTTTTGGCTAAAAACGCG-TTCCGGGTCC-TGGCTCAGT
* * * * * * *
158978 TTTGCATGATTTTTTGTGGCAAAAATTCTTGAAATATCTTTATTCATCTAACCAAATCTTACCCA
64 TTTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCA
* *
159043 CACTTGATTTAAGGATTTGTTTTTGCGAGCATCTGAATCATGTTTCGATTTAATTAGAAATTAAT
129 CA-TTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAAT
* * * *
159108 TTGAAAAAAATAGGAAAAACGATATTAAAAGCGTGAGAAGCCCTTCAATCTTTTTAGCGTTGAAT
193 TTG-AAAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTGAAT
*
159173 TATATATTTTTTATGAG-----T-------ATT---G-----TATTTCGGGGT-AATTTTTACAA
257 TATATATTTTTTATGAGTATTTTGGCAAAAATTGAGGAAAAATATTTC-GGGTCAATTTTTGCAA
159217 AATTTTA
321 AATTTTA
* * *
159224 GCCGAAATCGTGTACTATCATTG--TTTTTTTGGCTAAAATCGCGTTCCGGGGTCCCAGG-TAAG
1 GCCGAAATCGTGTACTATCA-TGCATTTTTTTGGCTAAAAACGCGTTCC-GGGT-CCTGGCTCAG
* * * *
159286 TTTTGCATGATTTTTGGCGTCAAGACTCCTTAAAATATATCTATATTCATCTAACCAAATCTCAG
63 TTTTGCATGATTTTTGGTGCCAAGACTCCTT-GAA-ATATCTATATTCATCTAACCAAATCTTAG
*** * * *
159351 CCACATTGTATTTAAGGATTTGTTTTTACGAATTTATAAATCTTGTTTTGATTTAATTAGAAATT
126 CCACATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATT
** * * * *
159416 AATTTGGAAAGAAAATAAGG-AAAACGATATTTGAAGCGTGAAAAAGGCTTTCATTTTTTTTGGG
190 AATTT-G-AA-AAAAT-AGGAAAAACGATATTAAAAGCGTG-AAAAGTCCTTCAATCTTTTT-GG
* * **
159480 CATTGAATTATATATTTTTTATGAGTATTTTCGCTAGAAATCAAGGAAAAA-ATTTTCGGGTCAA
249 CATTGAATTATATATTTTTTATGAGTATTTTGGC-AAAAATTGAGGAAAAATA-TTTCGGGTCAA
*
159544 TTTTTGGAAAATTTTA
312 TTTTTGCAAAATTTTA
* * ** * * *
159560 ACTGAAATCGTG---T-TCA--C-GGTTTTAGGCTGAAAACGCGTTCCGGGAT-TTGGCTCAGTT
1 GCCGAAATCGTGTACTATCATGCATTTTTTTGGCTAAAAACGCGTTCCGGG-TCCTGGCTCAGTT
* * * *
159617 TTGCATTATTTTTGGTGTCAAGACTCGTTGAAATATCTATATTCATCTACCCAAATCTTAGCCAC
65 TTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCAC
* * * *
159682 ATTAGATTTAAGAATTTGTTTTTATGAGCATCTGAATCTTATTTCGATTTAATTAAAAATTAA-T
130 ATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
* ** * * * * *
159746 TAAGAAAAATAATAAAAACGATATTAAAAGCGTGAAAAGTTCTCCAATCTTCTTAGCATTAAATT
194 TGA-AAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTGAATT
* * * * * * ** *
159811 ATATATATTTTATGAATATTTTAGCCAAAAATTGCCGGAAAATTTTTTTTGGTCAATTTTTGAAA
258 ATATATTTTTTATGAGTATTTT-GGCAAAAATTG-AGGAAAAATATTTCGGGTCAATTTTTGCAA
159876 AATTTTA
321 AATTTTA
* * * * ** * ** ** * *
159883 GCTGAAATCGTGTACAAACCAT-CATGGTTTTTGATTGAAAACGCGTTTTGAGACCCAGGCTTAG
1 GCCGAAATCGTGTAC-TATCATGCAT-TTTTTTGGCTAAAAACGCGTTCCG-GGTCCTGGCTCAG
* * * * * * * *
159947 TTTTGCATGATTTTTTGCGCCGAGACTTCATGAAATATCTATATTCATCTAATCAAATCTCAGTC
63 TTTTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCC
* * * * *
160012 ACATTGAATTTAAGGATTTATTTTTACGTGCCTATGAATCTTGTTTCGATTTAAGTAGAAATTAA
128 ACATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
* * * **
160077 -TTCAGAAAAATATGG-AAAACGATATTAAAAGCGTGAAAAGTCCTCCAAGTTTTTTTGGTGTTG
192 TTTGA-AAAAATA-GGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAA-TCTTTTTGGCATTG
* * * * *
160140 AATTATATATATTTTAGGAGTGTTGTGGCTAAAAATTGA-GACATAATATTTCGGGTC-ATCTTT
254 AATTATATATTTTTTATGAGTATTTTGGC-AAAAATTGAGGA-AAAATATTTCGGGTCAAT-TTT
160203 TGCAAAATTTTA
316 TGCAAAATTTTA
* ** * * * *
160215 GCCGAAATCGTGTACCATCA--CAATTTTTTTGGCTAAAAACTTGTTCCGGGGCCCCGGGTCAGC
1 GCCGAAATCGTGTACTATCATGC-ATTTTTTTGGCTAAAAACGCGTTCC-GGGTCCTGGCTCAGT
* * * *
160278 TTTGCATGATTTTTGGTGGCAAAAATCCTTGAAATATCTTTATTCATCTAACCAAATCTTAGCCA
64 TTTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCC-
* * *
160343 TACA-TGATTTAAGGATTTGTTTTTGCGAGCATTTGAATCATGTTTCGATTT-ATTAAGAAATTA
128 -ACATTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATT-AGAAATTA
* * *
160406 ATTTGAAAAAAAAAGGAAAAACGATATTAGAAA-CGTGAGAAA-CCCTTCAATCTTTTTAGCATT
191 ATTTG-AAAAAATAGGAAAAACGATATTA-AAAGCGTGA-AAAGTCCTTCAATCTTTTTGGCATT
* * * *
160469 GAATTATATATTTTTTATGAGTGTTGTGGCTAAAAATTG-TGAAAAATATTTCGGGTTAATTTTT
253 GAATTATATATTTTTTATGAGTATTTTGGC-AAAAATTGAGGAAAAATATTTCGGGTCAATTTTT
160533 GCAAAATTTTA
317 GCAAAATTTTA
* * *
160544 GCCGAAATCGTGTACTATCATTG--TTTTTTTGGCTAAAATCGCGTTCCGGGGTCCTGGGTCAAT
1 GCCGAAATCGTGTACTATCA-TGCATTTTTTTGGCTAAAAACGCGTTCC-GGGTCCTGGCTCAGT
* * * *
160607 TTTGCATGATTTTTGGCGCCAAGACTCCTTAAAATATATCTATATTCATCTAACCAAATCTCAAC
64 TTTGCATGATTTTTGGTGCCAAGACTCCTT-GAA-ATATCTATATTCATCTAACCAAATCTTAGC
*** * * * *
160672 CACATTGTATTTAAGGATTTGTTTTTACGAATTTCTAAATCTTGTTTTGATTTAATAAAAAATTA
127 CACATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTA
** * *
160737 ATTTGGAAAGAAAATAAGG-AAAACGATATTTGAAGCGTGAAAAAGGCTTTC-AT-TTTTTGGCA
191 ATTT-G-AA-AAAAT-AGGAAAAACGATATTAAAAGCGTG-AAAAGTCCTTCAATCTTTTTGGCA
** * * *
160799 TTGAATTATATATTTTTTATGAGTATTTTCACTAGAAATCGAGGAGAAAGT-TTTCGGGTCAATT
251 TTGAATTATATATTTTTTATGAGTATTTTGGC-AAAAATTGAGGA-AAAATATTTCGGGTCAATT
* *
160863 TTTGGAAATTTTTA
314 TTTGCAAAATTTTA
* * ** *
160877 GCTGAAATCGTGTACTAACCAT-CACGGTTTTCGGCTAAAAACGCGTTCCGGGATCC-GGCTCAG
1 GCCGAAATCGTGTACT-ATCATGCA-TTTTTTTGGCTAAAAACGCGTTCCGGG-TCCTGGCTCAG
160940 TTTTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCC
63 TTTTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCC
* * * * * *
161005 ACATTAGATTTAAGAATTTGCTTTTATGAGCATCTAAATCTTATTTCGATTTAATTAAAAATTAA
128 ACATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA
** ** * * * * * *
161070 TTCAAAAAAATAATAAAAACGTTATTAAAAGCGTAAAAAGTTCTCCAATCTTCTTGGCATTAAAT
192 TTTGAAAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTGAAT
* * * * ** *
161135 TATATATATTTTATGAGTATTTTAGCCAAAAATTGTCGG-AAAATTTTTTTGGTCAATTTTTGAA
257 TATATATTTTTTATGAGTATTTT-GGCAAAAATTG-AGGAAAAATATTTCGGGTCAATTTTTGCA
161199 AAATTTTA
320 AAATTTTA
* * * * * * * * * *
161207 GCCGAAATCGTGTACAAACCA-ACATGGTTTTTGGTTAAAAATGCGTTTCGAGTCCCAGGCTTAG
1 GCCGAAATCGTGTAC-TATCATGCAT-TTTTTTGGCTAAAAACGCGTTCCGGGT-CCTGGCTCAG
* * * * * *
161271 TTTTGCATGATTTATT-GCGCCGAGACTTCTTGAAATATCTATATTCATTTAATCAAATCTCAGC
63 TTTTGCATGATTT-TTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGC
** * *
161335 CACATTGAATTTAAGGATTTGTTTTTACGAGGTTATGAATCTTGTTTCGATTTAACTAGAAATTA
127 CACATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTA
* * * * ** * * **
161400 A-TTCAGAAAATATGAAAAACGATATTAAAAGCATGAAAAGTCCACCAGTTTTTTTGGTGTTGAA
191 ATTTGAAAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTGAA
* * *
161464 TTAAATATATATTTTATGAGTGTTGTGGCTAAAAATTGA-GACAAAATATTTCGGGTCAATTTTT
256 TT--ATATATTTTTTATGAGTATTTTGGC-AAAAATTGAGGA-AAAATATTTCGGGTCAATTTTT
161528 GCAAAATTTTA
317 GCAAAATTTTA
* * * * * * * *
161539 GTCGAAATCGTGTACCATCA--CAGTTTTTTGGCTAAAAACGTGTTCAGGGGCCTCGGGTTAGTT
1 GCCGAAATCGTGTACTATCATGCATTTTTTTGGCTAAAAACGCGTTCCGGGTCCT-GGCTCAGTT
* * * *
161602 TTGCATGATTTTTGGTGGCAAAAATCCTTGAAATATCTTTATTCATCTAACCAAATCTTAGCCAC
65 TTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCAC
* *
161667 ACTTGATTTAAGGATTTGTTTTTGCGAGCATCTGAATCATGTTTCGATTTAATTAGAAATTAATT
130 A-TTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATT
* * * * * * *
161732 TGAAAAAAATCGGAAAAATGATATTTGAAA-CGTTAAAAAAGGCTTTC-ATTTTTTTGGCATTGA
194 TG-AAAAAATAGGAAAAACGATA-TTAAAAGCG-T-GAAAAGTCCTTCAATCTTTTTGGCATTGA
** * * * *
161795 ATTATATATTTTTTATGAGTATTTTCACTAGAAATCGAGGAAAAATATTTCGGGTAAATTTTTGG
255 ATTATATATTTTTTATGAGTATTTTGGC-AAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGC
161860 AAAATTTTA
319 AAAATTTTA
* * * ** * *
161869 GCTGAAATCATGTACTAACCAT-CACAGTTTTCGGCTAAAAACGCGTTCCGGGATCC-AGCTCAG
1 GCCGAAATCGTGTACT-ATCATGCA-TTTTTTTGGCTAAAAACGCGTTCCGGG-TCCTGGCTCAG
*
161932 TTTTGCATGATTTTTGATGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCC
63 TTTTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCC
*
161997 ACATTAGATTTAAGGATTTGTTTTT-CTGAGCATCTGAATCTTGTTTCGATTTAATTGGAAATTA
128 ACATT-GATTTAAGGATTTGTTTTTAC-GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTA
* * * * * * *
162061 ATTCAGAAAGAAATAGGAAAAATGATATTAAAAGCGTTAAAAGTTCTCCAATCTTCTTGGCATCG
191 ATT-TGAAA-AAATAGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTG
* * * * *
162126 AATTATATATATTTTATGATTATTTTAGCCAAAAATTGAGGAAACATCTTTCGGGTCAATTTTTG
254 AATTATATATTTTTTATGAGTATTTT-GGCAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTG
162191 CAAAATTTTA
318 CAAAATTTTA
* ** * * * * *
162201 GCCGAAATCGTGTATTAATCAT-CACGGTTTTTGGCTAAAAACGTGTTCCAAGG-CCACGACTCT
1 GCCGAAATCGTGTACT-ATCATGCA-TTTTTTTGGCTAAAAACGCGTTCC-GGGTCC-TGGCTCA
* * * * * ** * *
162264 GTTTTGCATCAGTTTTGGCGCCGAGACTCCTTGAAATATCTTTATTCATCTAATAAAATCTCAAC
62 GTTTTGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGC
* * * *
162329 CACATTGGATTTAACGATTTGTTTTTATGTGCATCTGAATCTTGTATCGATTTAATTAGAAATTA
127 CACATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTA
* * * * *
162394 ATTCAGGAAAAAT--GAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCGTTTTGGCGTTGA
191 ATT-TGAAAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTGA
* *
162457 ATTATATATATTTTATGAGTATTTTTGTCAAAAATTGAGGAAAAAT
255 ATTATATATTTTTTATGAGTA-TTTTGGCAAAAATTGAGGAAAAAT
162503 CTTTTAGGTC
Statistics
Matches: 4318, Mismatches: 738, Indels: 402
0.79 0.14 0.07
Matches are distributed among these distances:
308 45 0.01
309 54 0.01
310 7 0.00
311 84 0.02
312 4 0.00
313 23 0.01
314 19 0.00
315 25 0.01
316 3 0.00
320 1 0.00
322 34 0.01
323 56 0.01
324 25 0.01
325 1 0.00
326 2 0.00
327 84 0.02
328 156 0.04
329 382 0.09
330 573 0.13
331 458 0.11
332 962 0.22
333 567 0.13
334 234 0.05
335 186 0.04
336 112 0.03
337 131 0.03
338 71 0.02
339 16 0.00
340 3 0.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (327 bp):
GCCGAAATCGTGTACTATCATGCATTTTTTTGGCTAAAAACGCGTTCCGGGTCCTGGCTCAGTTT
TGCATGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACA
TTGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTTG
AAAAAATAGGAAAAACGATATTAAAAGCGTGAAAAGTCCTTCAATCTTTTTGGCATTGAATTATA
TATTTTTTATGAGTATTTTGGCAAAAATTGAGGAAAAATATTTCGGGTCAATTTTTGCAAAATTT
TA
Found at i:161575 original size:994 final size:980
Alignment explanation
Indices: 156943--162502 Score: 4860
Period size: 994 Copynumber: 5.6 Consensus size: 980
156933 TCATAGTTTT
* * * * * * * * *
156943 TTTTTGGCTAAAAACGTGTTTCAGGACCCCGGGTCAGTTTTGCATGATTTTTGGTGGCAAAAATC
1 TTTTCGGCTAAAAACGCGTTCCGGGA-TCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
* * * **
157008 CTTGAAATATCTTTATTTATCTAACCAAATCTTAGCCACACTT-GATTTAAGGATGTGTTTTTGC
65 CTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACA-TTAGATTTAAGGATTTGTTTTTAT
* * * *
157072 GAGCATCTGAATCATGTTTCGTTTTAATTAGAAATTAATTTGAAAAAAA-AAGGAAAAACGATAT
129 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA-TTCAAAAAAATAA-TAAAAACGATAT
* * * * ** * * * * * **
157136 TAGAAGCATGAGAAGCCCTTCAATCTTTTTAGCGTTGAATTATATATTTTTTATGAGTA-TTGGG
192 TAAAAGCGTAAAAAGTTCTCCAATCTTCTTGGCATTGAATTATATATATTTTATGAGTATTTTAG
* * * * * *
157200 CTAAAAATTGAGAAAAGTATTTCGGGTTAATTTTTGCAAAATTTTCGCCGAAATCGTGTACTATC
257 CCAAAAATTGGGAAAA-TATTTCGGGTCAATTTTTGAAAAATTTTAGCCGAAATCGTGTACAATC
* * * * * * * *
157265 A-TTGTTTTTTTTTTTGGCT-AAAATCGCATTCCGGGGT-CCTGGGTCAATTTTGCATGATTTTT
321 ACATG-----GTTTTTGGCTAAAAAT-GCGTTCC-GAGTCCCAGGCTTAGTTTTGCATGATTTTT
* *
157327 GGCACCAAGACTCCTTAAAATATATCTATATTCATCTAACCAAATCTCAGCCACATTGTATTTAA
379 GGCGCCAAGACTCCTT-GAA-ATATCTATATTCATCTAACCAAATCTCAGCCACATTG-ATTTAA
* * * *
157392 GGATTTGTTTTTACGA-ATTTCTAAATCATGTTTTGATTTAATTAGAAATTAATTTGGAAAGAAA
441 GGATTTGTTTTTACGAGA-TTATGAATCTTGTTTCGATTTAATTAGAAATTAATTT-G-AAGAAA
* * * ** * * * * *
157456 ATAAGGAATACGATATTTGAAGCGTGAAAAAGGCTTTC-AT-ATTTTGGCATTGAATTATATAT-
503 ATATGAAAAACGATATTAAAAGCGTG-AAAAGTCCTCCAATCTTTTTGGCGTTGAATTATATATA
* * * * * * *
157518 TTTTAATGAGTATTTTCGCTAGAAATTGAGGAAAAATTTTTCGGGTCAAATTTTGGAAAATTTTA
567 TTTT-ATGAGTGTTGTGGCTAAAAATTGA-GAAAAATATTTCGGGTCAATTTTTGCAAAATTTTA
* * * **
157583 G-CTGAAAATCGTGTACTAACCATCACGGTTTTCGGCTAAAAACGCGTTCCGGGATCC-GACTCA
630 GAC-G-AAATCGTG---T-A-CATCACGTTTTTTGGCT-AAAACGCGTTCCGGGGTCCTGGGTCA
* *
157646 GTTTTGCATGATTTTTGGTGCCAAGACTCCTTAAAAATATCTATGTTCATCTAACCAAATCTTAG
687 GTTTTGCATGATTTTTGGTGCCAAGACTCCTT-GAAATATCTATATTCATCTAACCAAATCTTAG
* * * *
157711 CCACATTAGATTTAAGAATTTGTTTTTATGAGCATCTAAATCTTATTTCGATTTAATTAAAAATT
751 CCACATT-GATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAAAAATT
* * * * * *
157776 AATTTG-AA-AAAAT-AGGAAAAACGATATTAGAAGCGTG-AGAAGCCCTTCAATCTTTTTAGCG
815 AATTTGAAAGAAAATAAGG-AAAACGATATTTGAAGCGTGAAAAAGGCTTTC-AT-TTTTTGGCA
* ** * *
157837 TTGAATTATATATTTTTTATGAGTATTGTGGCTTA-AAATTG-GGAAAAATATTTCGGGTTAATT
877 TTGAATTATATATTTTTTATGAGTATTTTCAC-TAGAAATCGAGGAAAAAT-TTTCGGGTCAATT
* * * * *****
157900 TTTGCAAAATTTTCGCCGAAATCGTGTACT-ATCATTGTTTTT
940 TTTGGAAAATTTTAGCTGAAATCGTGTACTAACCA-T-CACGG
* * * * **
157942 TTTTTGGCTAAAATCGCGTTCCGAGG-TCCTGGGTCAGTTTTGCATGATTTTCGGCACCAAGACT
1 TTTTCGGCTAAAAACGCGTTCCG-GGATCC-GGCTCAGTTTTGCATGATTTTTGGTGCCAAGACT
* * *
158006 CCTTAAAATATATCTATATTCATCTAACCAAATCTCAGCCACATT-GTATTTAAGGATTTATTTT
64 CCTT-GAA-ATATCTATATTCATCTAACCAAATCTTAGCCACATTAG-ATTTAAGGATTTGTTTT
* *** * * * * * **
158070 TACGAATTTCTAAATCATGTTTTGATTTAATTAGAAATTAATTTGGAAAGAGAATAAGGAAAACG
126 TATGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA-TT-CAAA-AAAATAATAAAAACG
** * * * * *
158135 ATATTTGAAGCATGAAAAAGGCTT-T-CATTTTTTTTGGCATTGAATTATATATTTTTTATGAGT
188 ATATTAAAAGCGT-AAAAA-G-TTCTCCAATCTTCTTGGCATTGAATTATATATATTTTATGAGT
* * * * * * *
158198 ATTTTCGCTAGAAATCGAGGAAAAATTTTTCGGGTCAATTTTTGGAAAATTTTAGCTGAAAATCG
250 ATTTTAGCCAAAAATTG-GG-AAAATATTTCGGGTCAATTTTTGAAAAATTTTAGCCG-AAATCG
* * ** * * * * *
158263 TGTACTAACCATCACGGTTTTCAGCTAAAAACGCGTTCCGGGAT-CC-GACTCATTTTTGCATGA
312 TGTAC-AATCA-CATGGTTTTTGGCTAAAAATGCGTTCCGAG-TCCCAGGCTTAGTTTTGCATGA
* * * *
158326 TTTTTGGTGCCAAGATTTCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTAGATT
374 TTTTTGGCGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATT-GATT
* * * * * * *
158391 TAAGAATTTGTTTTTATGAGCA-TCTGAATCTTATTTCGATTTAATTAAAAATTAA-AT-CAGAA
438 TAAGGATTTGTTTTTACGAG-ATTATGAATCTTGTTTCGATTTAATTAGAAATTAATTTGAAG-A
* * * * * ** * *
158453 AAATAAT-AAAAACTATATTAAAAGTGTGAAAAGTTCTCCAATGTTCTTATCATTAAATTATATA
501 AAAT-ATGAAAAACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCGTTGAATTATATA
* * * * * * * * ** *
158517 TATATTACGAGTATTTTAGCCAAAAATTGTCGGAAAAATTTTTTTGGTCAATTTTTGAAAAATTT
565 TATTTTATGAGTGTTGTGGCTAAAAATTG--AGAAAAATATTTCGGGTCAATTTTTGCAAAATTT
* * * * * * * * *
158582 TAGCCGAAATCGTGTACAAACCATCATGGTTTTTTGGCTAAAAACGTGTTTCGAGGCCCAGGCTT
628 TAGACGAAATCGTGT----A-CATCA-CGTTTTTTGGCT-AAAACGCGTTCCGGGGTCCTGGGTC
* * * * *
158647 AGTTTTGCATGATTTGTT-GCGCCGAGACTTCTTGAAATATCTATATTCATCTAATCAAATCTCA
686 AGTTTTGCATGATTT-TTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTA
* * * *
158711 GCCACATTGAATTTAAGGATTTGTTTTTACGAGCCTATGAATCTTGTTTCGATTTAACTAGAAAT
750 GCCACATTG-ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAAAAAT
* * * * ** * * **
158776 TAA-TTCAGA-AAAATATGAAAAACGATATTAAAAGCGTG-AAAAGTCTATCAGTTTTTGTGGTG
814 TAATTTGAAAGAAAATAAGGAAAACGATATTTGAAGCGTGAAAAAGGCTTTCA-TTTTT-TGGCA
* * * ** * *
158838 TTGAATTATATATATTTTATGAGTGTTGTGGCTAAAAATTGA-GACAAAATATTTCGGGTCAATT
877 TTGAATTATATATTTTTTATGAGTATTTTCACTAGAAATCGAGGA-AAAAT-TTTCGGGTCAATT
** *
158902 TTTACAAAATTTTAG-TCGAAATCGTG---T-ACCATCACAGT
940 TTTGGAAAATTTTAGCT-GAAATCGTGTACTAACCATCAC-GG
* * * ** * * * * *
158940 TTTTTGGCTAAAAACGTGTTTCGGGGCCCAAGG-TCAGCTTTGCATGATTTTTTGTGGCAAAAAT
1 TTTTCGGCTAAAAACGCGTTCCGGGATCC--GGCTCAGTTTTGCATGATTTTTGGTGCCAAGACT
* * * *
159004 TCTTGAAATATCTTTATTCATCTAACCAAATCTTACCCACACTT-GATTTAAGGATTTGTTTTTG
64 CCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACA-TTAGATTTAAGGATTTGTTTTTA
* * * **
159068 CGAGCATCTGAATCATGTTTCGATTTAATTAGAAATTAATTTGAAAAAAATAGGAAAAACGATAT
128 TGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAA-TTCAAAAAAATAATAAAAACGATAT
* * ** * * * * *
159133 TAAAAGCGTGAGAAGCCCTTCAATCTTTTTAGCGTTGAATTATATATTTTTTATGAG-----T--
192 TAAAAGCGTAAAAAGTTCTCCAATCTTCTTGGCATTGAATTATATATATTTTATGAGTATTTTAG
*
159191 ------ATT--G----TATTTCGGGGT-AATTTTT-ACAAAATTTTAGCCGAAATCGTGTACTAT
257 CCAAAAATTGGGAAAATATTTC-GGGTCAATTTTTGA-AAAATTTTAGCCGAAATCGTGTACAAT
* * * *
159242 CA-TTGTTTTTTTGGCT-AAAATCGCGTTCCGGGGTCCCAGG-TAAGTTTTGCATGATTTTTGGC
320 CACATG-GTTTTTGGCTAAAAAT-GCGTTCC-GAGTCCCAGGCTTAGTTTTGCATGATTTTTGGC
* *
159304 GTCAAGACTCCTTAAAATATATCTATATTCATCTAACCAAATCTCAGCCACATTGTATTTAAGGA
382 GCCAAGACTCCTT-GAA-ATATCTATATTCATCTAACCAAATCTCAGCCACATTG-ATTTAAGGA
* *
159369 TTTGTTTTTACGA-ATTTATAAATCTTGTTTTGATTTAATTAGAAATTAATTTGGAAAGAAAATA
444 TTTGTTTTTACGAGA-TTATGAATCTTGTTTCGATTTAATTAGAAATTAATTT-G-AAGAAAATA
* * ** * * * * * * *
159433 AGGAAAACGATATTTGAAGCGTGAAAAAGGCTTTCATTTTTTTTGGGCATTGAATTATATATTTT
506 TGAAAAACGATATTAAAAGCGTG-AAAAGTCCTCCAATCTTTTT-GGCGTTGAATTATATATATT
* * * * ** *
159498 TTATGAGTATTTTCGCTAGAAATCAAGGAAAAA-ATTTTCGGGTCAATTTTTGGAAAATTTTA-A
569 TTATGAGTGTTGTGGCTAAAAATTGA-GAAAAATA-TTTCGGGTCAATTTTTGCAAAATTTTAGA
* * * * *
159561 CTGAAATCGTGT---TCACGGTTTTAGGCTGAAAACGCGTTCCGGGAT-TTGGCTCAGTTTTGCA
632 C-GAAATCGTGTACATCACGTTTTTTGGCT-AAAACGCGTTCCGGGGTCCTGGGTCAGTTTTGCA
* * * *
159622 TTATTTTTGGTGTCAAGACTCGTTGAAATATCTATATTCATCTACCCAAATCTTAGCCACATTAG
695 TGATTTTTGGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATT-G
* * *
159687 ATTTAAGAATTTGTTTTTATGAGCATCTGAATCTTATTTCGATTTAATTAAAAATTAA-TT--AA
759 ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAAAAATTAATTTGAAA
** ** * * *
159749 GAAAAATAATAAAAACGATATTAAAAGCGTG-AAAA-G-TTCTCCAATCTTCTTAGCATTAAATT
824 G-AAAATAAGGAAAACGATATTTGAAGCGTGAAAAAGGCTT-T-C-AT-TTTTTGGCATTGAATT
* * * * * * * ** *
159811 ATATATATTTTATGAATATTTT-AGCCAAAAATTGCCGGAAAATTTTTTTTGGTCAATTTTTGAA
884 ATATATTTTTTATGAGTATTTTCA-CTAGAAATCG-AGGAAAA-ATTTTCGGGTCAATTTTTGGA
* *
159875 AAATTTTAGCTGAAATCGTGTACAAACCATCATGG
946 AAATTTTAGCTGAAATCGTGTACTAACCATCACGG
* ** * ** * * * * * * *
159910 TTTTTGATTGAAAACGCGTTTTGAGACCCAGGCTTAGTTTTGCATGATTTTTTGCGCCGAGACTT
1 TTTTCGGCTAAAAACGCGTTCCGGGATCC-GGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
* * * * * *
159975 CATGAAATATCTATATTCATCTAATCAAATCTCAGTCACATT-GAATTTAAGGATTTATTTTTAC
65 CTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTAG-ATTTAAGGATTTGTTTTTAT
* * * * * *
160039 GTGCCTATGAATCTTGTTTCGATTTAAGTAGAAATTAATTCAGAAAAAT-ATGGAAAACGATATT
129 GAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAAAAAAATAAT-AAAAACGATATT
* * * * ** * * * *
160103 AAAAGCGTGAAAAGTCCTCCAAGTTTTTTTGGTGTTGAATTATATATATTTTAGGAGTGTTGTGG
193 AAAAGCGTAAAAAGTTCTCCAA-TCTTCTTGGCATTGAATTATATATATTTTATGAGTATTTTAG
* * * *
160168 CTAAAAATTGAGACATAATATTTCGGGTC-ATCTTTTGCAAAATTTTAGCCGAAATCGTGTACCA
257 CCAAAAATTGGGA-A-AATATTTCGGGTCAAT-TTTTGAAAAATTTTAGCCGAAATCGTGTACAA
* * * * * * * * *
160232 TCACAAT-TTTTTTGGCTAAAAACT-TGTTCCGGGGCCCCGGGTCAGCTTTGCATGATTTTTGGT
319 TCAC-ATGGTTTTTGGCTAAAAA-TGCGTTCCGAGTCCCAGGCTTAGTTTTGCATGATTTTTGGC
* * * * *
160295 GGCAAAAATCCTTGAAATATCTTTATTCATCTAACCAAATCTTAGCCATACA-TGATTTAAGGAT
382 GCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCC--ACATTGATTTAAGGAT
* * * * *
160359 TTGTTTTTGCGAGCATT-TGAATCATGTTTCGATTT-ATTAAGAAATTAATTTGAAAAAAAAAGG
445 TTGTTTTTACGAG-ATTATGAATCTTGTTTCGATTTAATT-AGAAATTAATTTGAAGAAAATATG
* * * * *
160422 AAAAACGATATTAGAAA-CGTGAGAAA-CCCTTCAATCTTTTTAGCATTGAATTATATATTTTTT
508 AAAAACGATATTA-AAAGCGTGA-AAAGTCCTCCAATCTTTTTGGCGTTGAATTATATATATTTT
* * *
160485 ATGAGTGTTGTGGCTAAAAATTGTGAAAAATATTTCGGGTTAATTTTTGCAAAATTTTAGCCGAA
571 ATGAGTGTTGTGGCTAAAAATTGAGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGACGAA
* *
160550 ATCGTGTACTATCATTGTTTTTTTGGCTAAAATCGCGTTCCGGGGTCCTGGGTCAATTTTGCATG
636 ATCGTGTAC-ATCA-CG-TTTTTTGGCTAAAA-CGCGTTCCGGGGTCCTGGGTCAGTTTTGCATG
* * * *
160615 ATTTTTGGCGCCAAGACTCCTTAAAATATATCTATATTCATCTAACCAAATCTCAACCACATTGT
697 ATTTTTGGTGCCAAGACTCCTT-GAA-ATATCTATATTCATCTAACCAAATCTTAGCCACATTG-
*** * * *
160680 ATTTAAGGATTTGTTTTTACGAATTTCTAAATCTTGTTTTGATTTAATAAAAAATTAATTTGGAA
759 ATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAAAAATTAATTT-GAA
160745 AGAAAATAAGGAAAACGATATTTGAAGCGTGAAAAAGGCTTTCATTTTTTGGCATTGAATTATAT
823 AGAAAATAAGGAAAACGATATTTGAAGCGTGAAAAAGGCTTTCATTTTTTGGCATTGAATTATAT
* *
160810 ATTTTTTATGAGTATTTTCACTAGAAATCGAGGAGAAAGTTTTCGGGTCAATTTTTGGAAATTTT
888 ATTTTTTATGAGTATTTTCACTAGAAATCGAGGA-AAAATTTTCGGGTCAATTTTTGGAAAATTT
160875 TAGCTGAAATCGTGTACTAACCATCACGG
952 TAGCTGAAATCGTGTACTAACCATCACGG
160904 TTTTCGGCTAAAAACGCGTTCCGGGATCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTCC
1 TTTTCGGCTAAAAACGCGTTCCGGGATCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTCC
* *
160969 TTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTAGATTTAAGAATTTGCTTTTATGA
66 TTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTAGATTTAAGGATTTGTTTTTATGA
* * * *
161034 GCATCTAAATCTTATTTCGATTTAATTAAAAATTAATTCAAAAAAATAATAAAAACGTTATTAAA
131 GCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAAAAAAATAATAAAAACGATATTAAA
*
161099 AGCGTAAAAAGTTCTCCAATCTTCTTGGCATTAAATTATATATATTTTATGAGTATTTTAGCCAA
196 AGCGTAAAAAGTTCTCCAATCTTCTTGGCATTGAATTATATATATTTTATGAGTATTTTAGCCAA
* ** *
161164 AAATTGTCGGAAAATTTTTTTGGTCAATTTTTGAAAAATTTTAGCCGAAATCGTGTACAAACCAA
261 AAATTG--GGAAAATATTTCGGGTCAATTTTTGAAAAATTTTAGCCGAAATCGTGTAC-AATC-A
* * *
161229 CATGGTTTTTGGTTAAAAATGCGTTTCGAGTCCCAGGCTTAGTTTTGCATGATTTATT-GCGCCG
322 CATGGTTTTTGGCTAAAAATGCGTTCCGAGTCCCAGGCTTAGTTTTGCATGATTT-TTGGCGCCA
* * *
161293 AGACTTCTTGAAATATCTATATTCATTTAATCAAATCTCAGCCACATTGAATTTAAGGATTTGTT
386 AGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTG-ATTTAAGGATTTGTT
* * *
161358 TTTACGAGGTTATGAATCTTGTTTCGATTTAACTAGAAATTAA-TT-CAGAAAATATGAAAAACG
450 TTTACGAGATTATGAATCTTGTTTCGATTTAATTAGAAATTAATTTGAAGAAAATATGAAAAACG
* * * * *
161421 ATATTAAAAGCATGAAAAGTCCACCAGTTTTTTTGGTGTTGAATTAAATATATATTTTATGAGTG
515 ATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCGTTGAATT--ATATATATTTTATGAGTG
*
161486 TTGTGGCTAAAAATTGAGACAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGTCGAAATCGTG
578 TTGTGGCTAAAAATTGAGA-AAAATATTTCGGGTCAATTTTTGCAAAATTTTAGACGAAATCGTG
* * *
161551 TACCATCACAGTTTTTTGGCTAAAAACGTGTTCAGGGG-CCTCGGGTTAGTTTTGCATGATTTTT
642 TA-CATCAC-GTTTTTTGGCT-AAAACGCGTTCCGGGGTCCT-GGGTCAGTTTTGCATGATTTTT
* * * *
161615 GGTGGCAAAAATCCTTGAAATATCTTTATTCATCTAACCAAATCTTAGCCACACTTGATTTAAGG
703 GGTGCCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACA-TTGATTTAAGG
* * * *
161680 ATTTGTTTTTGCGAGCATCTGAATCATGTTTCGATTTAATTAGAAATTAATTTGAAA-AAAAT-C
767 ATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAAAAATTAATTTGAAAGAAAATAA
* * *
161743 GGAAAAATGATATTTGAAACGTTAAAAAAGGCTTTCATTTTTTTGGCATTGAATTATATATTTTT
832 GG-AAAACGATATTTGAAGCG-TGAAAAAGGCTTTCA-TTTTTTGGCATTGAATTATATATTTTT
*
161808 TATGAGTATTTTCACTAGAAATCGAGGAAAAATATTTCGGGTAAATTTTTGGAAAATTTTAGCTG
894 TATGAGTATTTTCACTAGAAATCGAGGAAAAAT-TTTCGGGTCAATTTTTGGAAAATTTTAGCTG
* *
161873 AAATCATGTACTAACCATCACAG
958 AAATCGTGTACTAACCATCACGG
* *
161896 TTTTCGGCTAAAAACGCGTTCCGGGATCCAGCTCAGTTTTGCATGATTTTTGATGCCAAGACTCC
1 TTTTCGGCTAAAAACGCGTTCCGGGATCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTCC
*
161961 TTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTAGATTTAAGGATTTGTTTTTCTGA
66 TTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTAGATTTAAGGATTTGTTTTTATGA
* ** *
162026 GCATCTGAATCTTGTTTCGATTTAATTGGAAATTAATTCAGAAAGAAATAGGAAAAATGATATTA
131 GCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCA-AAA-AAATAATAAAAACGATATTA
* * *
162091 AAAGCGTTAAAAGTTCTCCAATCTTCTTGGCATCGAATTATATATATTTTATGATTATTTTAGCC
194 AAAGCGTAAAAAGTTCTCCAATCTTCTTGGCATTGAATTATATATATTTTATGAGTATTTTAGCC
* * *
162156 AAAAATTGAGGAAACATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTATTAATC
259 AAAAATTG-GGAAA-ATATTTCGGGTCAATTTTTGAAAAATTTTAGCCGAAATCGTGTA-CAATC
* * * * * * * *
162221 ATCACGGTTTTTGGCTAAAAACGTGTTCCAAG-GCCACGACTCT-GTTTTGCATCAGTTTTGGCG
321 A-CATGGTTTTTGGCTAAAAATGCGTTCCGAGTCCCA-GGCT-TAGTTTTGCATGATTTTTGGCG
* * ** * *
162284 CCGAGACTCCTTGAAATATCTTTATTCATCTAATAAAATCTCAACCACATTGGATTTAACGATTT
383 CCAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATT-GATTTAAGGATTT
* * * * * *
162349 GTTTTTATGTGCA-TCTGAATCTTGTATCGATTTAATTAGAAATTAA-TTCAGGAAAA-ATGAAA
447 GTTTTTACGAG-ATTATGAATCTTGTTTCGATTTAATTAGAAATTAATTTGAAGAAAATATGAAA
*
162411 AACGATATTAAAAGCGTGAAAAGTCCTCCAATCGTTTTGGCGTTGAATTATATATATTTTATGAG
511 AACGATATTAAAAGCGTGAAAAGTCCTCCAATCTTTTTGGCGTTGAATTATATATATTTTATGAG
* * *
162476 TATTTTTG-TCAAAAATTGAGGAAAAAT
576 TGTTGTGGCT-AAAAATTGA-GAAAAAT
162503 CTTTTAGGTC
Statistics
Matches: 3768, Mismatches: 599, Indels: 395
0.79 0.13 0.08
Matches are distributed among these distances:
964 2 0.00
965 3 0.00
966 186 0.05
967 62 0.02
968 12 0.00
969 60 0.02
970 200 0.05
971 22 0.01
972 107 0.03
973 5 0.00
974 1 0.00
975 23 0.01
976 55 0.01
977 35 0.01
980 2 0.00
983 3 0.00
984 41 0.01
985 41 0.01
986 12 0.00
987 26 0.01
988 10 0.00
989 84 0.02
990 61 0.02
991 148 0.04
992 519 0.14
993 313 0.08
994 634 0.17
995 112 0.03
996 114 0.03
997 16 0.00
998 63 0.02
999 81 0.02
1000 70 0.02
1001 303 0.08
1002 159 0.04
1003 27 0.01
1004 75 0.02
1005 29 0.01
1006 33 0.01
1007 15 0.00
1008 3 0.00
1010 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (980 bp):
TTTTCGGCTAAAAACGCGTTCCGGGATCCGGCTCAGTTTTGCATGATTTTTGGTGCCAAGACTCC
TTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTAGATTTAAGGATTTGTTTTTATGA
GCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAAAAAAATAATAAAAACGATATTAAA
AGCGTAAAAAGTTCTCCAATCTTCTTGGCATTGAATTATATATATTTTATGAGTATTTTAGCCAA
AAATTGGGAAAATATTTCGGGTCAATTTTTGAAAAATTTTAGCCGAAATCGTGTACAATCACATG
GTTTTTGGCTAAAAATGCGTTCCGAGTCCCAGGCTTAGTTTTGCATGATTTTTGGCGCCAAGACT
CCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGATTTAAGGATTTGTTTTTACG
AGATTATGAATCTTGTTTCGATTTAATTAGAAATTAATTTGAAGAAAATATGAAAAACGATATTA
AAAGCGTGAAAAGTCCTCCAATCTTTTTGGCGTTGAATTATATATATTTTATGAGTGTTGTGGCT
AAAAATTGAGAAAAATATTTCGGGTCAATTTTTGCAAAATTTTAGACGAAATCGTGTACATCACG
TTTTTTGGCTAAAACGCGTTCCGGGGTCCTGGGTCAGTTTTGCATGATTTTTGGTGCCAAGACTC
CTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTGATTTAAGGATTTGTTTTTACGA
GCATCTGAATCTTGTTTCGATTTAATTAAAAATTAATTTGAAAGAAAATAAGGAAAACGATATTT
GAAGCGTGAAAAAGGCTTTCATTTTTTGGCATTGAATTATATATTTTTTATGAGTATTTTCACTA
GAAATCGAGGAAAAATTTTCGGGTCAATTTTTGGAAAATTTTAGCTGAAATCGTGTACTAACCAT
CACGG
Found at i:163961 original size:39 final size:41
Alignment explanation
Indices: 163894--163989 Score: 160
Period size: 39 Copynumber: 2.4 Consensus size: 41
163884 TTTCTTCGAG
*
163894 GAGTTCTTCGTCTTCTTCGAGTAGTGGAGGGTCGAGCTACTC
1 GAGTTCTTCGTCTTCGTC-AGTAGTGGAGGGTCGAGCTACTC
163936 GAGTTCTTCGTCTTCGTC-G-AGTGGAGGGTCGAGCTACTC
1 GAGTTCTTCGTCTTCGTCAGTAGTGGAGGGTCGAGCTACTC
163975 GAGTTCTTCGTCTTC
1 GAGTTCTTCGTCTTC
163990 TGATGAACAG
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
39 35 0.66
40 1 0.02
42 17 0.32
ACGTcount: A:0.12, C:0.23, G:0.30, T:0.34
Consensus pattern (41 bp):
GAGTTCTTCGTCTTCGTCAGTAGTGGAGGGTCGAGCTACTC
Found at i:168427 original size:329 final size:325
Alignment explanation
Indices: 166789--170452 Score: 3133
Period size: 329 Copynumber: 11.0 Consensus size: 325
166779 CGATATGGGT
* * * *
166789 CCCGAAACGCATTTTTAGTCAAAAAACC--G-TGATGAGTACACGATATCGGCTAAAATTTTGCA
1 CCCGAAA-GCGTTTTTAG-CCAAAAACCGAGATGATTAGTACACGATTTCGGCTAAAATTTTGCA
* * * *
166851 AAAATTGACCCGAAATATATTTCCTCAATTTTTAGCCACAATACTCATAAAAAATATATAATTCA
64 AAAATTGACCCAAAAGAT-TTTTCTCAATTTTT-G---GAATACTCATAAAAAATATATAATTCA
* * *
166916 ACGCTAAAAAGATTGAAGGCCTTTTCAAC-CTTTTAATATCGTTTTTCATATTTTTTATGAAATA
124 ACGCCAAAAAAATTGAAGGCCTTTTC-ACGCTTTTAATATCGTTTTTCATATTTTTT-TGAATTA
166980 ATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGC
187 ATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGC
* ** *
167045 TAATATTTTTTTAGATGAATATAGATATTTCAAGGAGTATTGGCGCAAAAAATCATGCAAAA-TA
252 TAAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAACT-
* *
167109 GA-GTCGGGC
316 GACCTAGGGC
* * * * **
167118 CCAAGAACGCGTTTTTAGCCGAAAA-CAATGATTG-TTAGTACACGATTTTAGCTAAAATTTTGC
1 CC-CGAAAGCGTTTTTAGCCAAAAACCGA-GA-TGATTAGTACACGATTTCGGCTAAAATTTTGC
* * * *
167181 AAAAATTGATCCGAAAGATTTTTTCTCAATTTCTAGCGAAAATACTCAT-AAAAATATAAAATTC
63 AAAAATTGACCCAAAAGA-TTTTTCTCAATTT-TTG-G--AATACTCATAAAAAATATATAATTC
* * * * * * *
167245 AATGCCAAAAAAATTGAAAGCTTTTTTCACACTTCTAATATCGTTTTTCCTATCTTATTTTACAA
123 AACGCCAAAAAAATTGAAGGC-CTTTTCACGCTTTTAATATCGTTTTTCATAT-TT-TTTT-GAA
* * * *
167310 TTAATTTTTGATTAAATCGAAACAAGATTTATATACTCGTAAAAACAAATCCTTAAATGCAATGT
184 TTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGT
* * * * ** *
167375 GGCT-GGAATTTGGTTAGATAAATATAGATATATTTTAAATAGTCTTAGCGTC-AAAAATCATGC
249 GGCTAAG-ATTTGATTAGATGAATATAG--ATATTTCAAGGAGTCTTGGCG-CAAAAAATCATGC
*
167438 AAAACTAACCTAGGGC
310 AAAACTGACCTAGGGC
* * * * *
167454 CCCGAAACGCGTTTTTAGCCAAAAACCGTGATTTCGACTAACGTACACGATTTCGCCTAATATAT
1 CCCGAAA-GCGTTTTTAGCCAAAAACCGAGA--T-GA-TTA-GTACACGATTTCGGCTAAAATTT
*** * * ** *
167519 TGCAAAAACCAAACCTGAAAA-ATATTTTCCTTCACTTTTGTCTAAAATACTCATAATATATATA
60 TGCAAAAA-TTGACC-CAAAAGAT-TTTT-C-TCA-ATTT-T-TGGAATACTCATAA-A-AAATA
* ** * * * * * *
167583 TATAATTAAATTCCAAAAAGATTGGAA-GACTATTCACACTTTTAATATAGTTTTTCATATTTTC
115 TATAATTCAACGCCAAAAAAATT-GAAGGCCTTTTCACGCTTTTAATATCGTTTTTCATATTTTT
* *
167647 TT-AATTAATTTCTAATTAAATCGAAACAAGATTTATATGCTCGTAAAAATAAATCCTTAAATGC
179 TTGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGC
* * * * * * *** *
167711 ATTGTGGATGAGACTTGATTAGATGAATATAGATATTTCAAAGAGTCTCGATACCAAAAATCATG
244 AATGTGGCTAAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATG
* * *
167776 CAAAACAGAGCTGGGGC
309 CAAAACTGACCTAGGGC
* * * * *
167793 CCCGAAATGCGTTTTTAGCAAAAAAACAGTGATGGTTACTACACGATTTCGGCTAAAATTTTGCA
1 CCCGAAA-GCGTTTTTAGC-CAAAAACCGAGATGATTAGTACACGATTTCGGCTAAAATTTTGC-
167858 AAAAATT-ACCCGAAAA-ATTTTTCCTCAATTTTTGGCTAAAATACTCATGAAATATATATATAT
63 AAAAATTGACCC-AAAAGATTTTT-CTCAATTTTTGG----AATACTC-----ATA-A-A-A-A-
* * * * *
167921 ATATATAATTTAACGCCAAAAATATTGGAGGACTTTTCACGCTTTTAATAT-ATTTTTCATATTT
112 ATATATAATTCAACGCCAAAAAAATTGAAGGCCTTTTCACGCTTTTAATATCGTTTTTCATATTT
* * * * *
167985 TTTCTGAATTAATGTCTAATCAAATCGAAACAAGATTCAGA-GACTCGTAAAAATAAATTCTTAA
177 TTT-TGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATG-CTCGTAAAAACAAATCCTTAA
** *
168049 ATGCAATGCAGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAAT
240 ATGCAATGTGGCTAAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAAT
*
168114 CATGCAAAACCGACCTAGGGC
305 CATGCAAAACTGACCTAGGGC
** * * *
168135 CTTGGAAAGCGTTTTTTAGCCAAAAACCGAGATGATTATTACACGATTTCGGCAAAAATTTTACA
1 C-CCGAAAGCG-TTTTTAGCCAAAAACCGAGATGATTAGTACACGATTTCGGCTAAAATTTTGC-
*
168200 AAAAATTGACCTAAAAGATATTTTCTCAATTTTTGG-ATACTCATAAAAAATATATAATTCAACG
63 AAAAATTGACCCAAAAGAT-TTTTCTCAATTTTTGGAATACTCATAAAAAATATATAATTCAACG
* * *
168264 CTAAAAAGATTGAAGGCCTTTTCAAC-CTTTTAATATCGTTTTTCATATTTTTTATGAAATAATT
127 CCAAAAAAATTGAAGGCCTTTTC-ACGCTTTTAATATCGTTTTTCATATTTTTT-TGAATTAATT
* *
168328 TCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAGATACTTAAATGCAATGTGGCTAA
190 TCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTAA
* * * * *
168393 TAATTT-TTTAGATGAATATAGATATTTCAAGGAGTATTGGCGCAAGAAATCATGCAAAATTGA-
255 -GATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAACTGAC
* *
168456 GTCGGGC
319 CTAGGGC
* * * * **
168463 CCCAGAACGCGTTTTTAGCCGAAAA-CAATGATGGTTAGTACACGATTTTAGCTAAAATTTTGCA
1 CCC-GAAAGCGTTTTTAGCCAAAAACCGA-GATGATTAGTACACGATTTCGGCTAAAATTTTGCA
* ** * * *
168527 AAAATTGACACGGAAGATTTTTTCTCAATTTCTAGCGAAAATACTCGT-AAAAATATAAAATTCA
64 AAAATTGACCCAAAAGA-TTTTTCTCAATTT-TTG-G--AATACTCATAAAAAATATATAATTCA
* * * * * *
168591 ATGCCAAAAAAATTGAAAGCTTTTTTCACGCTTCTAATATCGTTTTTCCTATCTTATTTTACAAT
124 ACGCCAAAAAAATTGAAGGC-CTTTTCACGCTTTTAATATCGTTTTTCATAT-TT-TTTT-GAAT
* * * *
168656 TAATTTTTGATTAAATCGAAACAAGATTTAAATACTCGTAAAAACAAATCCTTAAATGCAATGTG
185 TAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTG
* * * * * *
168721 GTTGAGATTTGGTTAGATAAATATAGATATATTTTATA-GAGTCTTAGCGTC-AAAAATCATGCA
250 GCTAAGATTTGATTAGATGAATATAG--ATATTTCA-AGGAGTCTTGGCG-CAAAAAATCATGCA
* *
168784 AAACTGACATGGGGC
311 AAACTGACCTAGGGC
* * * * * *
168799 CCCGAAACACGTTTTTAGCCAAAAACCGTGATTTCGACTAACGTACACGATTTCGCCTAATATAT
1 CCCGAAA-GCGTTTTTAGCCAAAAACCGAGA--T-GA-TTA-GTACACGATTTCGGCTAAAATTT
*** ** * * **
168864 TGCAAAAACCAACCTGAAATATTTTTCCTCACTTTTGTCTAAAATACTCATAATATATATATATA
60 TGCAAAAATTGACCCAAAAGATTTTT-CTCA-ATTT-T-TGGAATACTCAT-A-A-A-A-A-ATA
* ** * * * * * *
168929 TATAATTAAATTCCAAAAAGATTGGAA-GACTATTCACACTTTTAATATAGTTTTTCATATTTTC
115 TATAATTCAACGCCAAAAAAATT-GAAGGCCTTTTCACGCTTTTAATATCGTTTTTCATATTTTT
* *
168993 TT-AATTAATTTCTAATTAAATCGAAACAAAATTTAGATGCTCGTAAAAATAAATCCTTAAATGC
179 TTGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGC
* * * * * *** *
169057 ATTGTGGTTGAGATTTGATTAGATGAATATAGATATTTCAAAGAGTCTCGATACCAAAAATCATG
244 AATGTGGCTAAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATG
* * *
169122 CAAAACAGAGCTGGGGC
309 CAAAACTGACCTAGGGC
* * * * * *
169139 CACGAAACGCGTTTTTAGCAAAAAAATCGTGATGGTTACTACACGATTTCGGCTAAAATTTTGCA
1 CCCGAAA-GCGTTTTTAGC-CAAAAACCGAGATGATTAGTACACGATTTCGGCTAAAATTTTGC-
* * * * * *
169204 AAAAATT-ACCCAAAAAATTTTTCCTAAATTTTAGGCTAAAATACTCATGAAATATATATAATTT
63 AAAAATTGACCCAAAAGATTTTT-CTCAATTTTTGG----AATACTCATAAAAAATATATAATTC
* * * * *
169268 AACGCCAAAAATATTGAAGGACTTTTCATGCTTTTAATAT-ATTTTACATATTTTTTCTGAATTA
123 AACGCCAAAAAAATTGAAGGCCTTTTCACGCTTTTAATATCGTTTTTCATATTTTTT-TGAATTA
* * * **
169332 ATGTCTAATTAAATCGAAACAAGATTCAGA-GACTCGTAAAAATAAATTCC-TAAATGCAATGCA
187 ATTTCTAATTAAATCGAAACAAGATTTAGATG-CTCGTAAAAACAAA-TCCTTAAATGCAATGTG
*
169395 GCTAAGATTTGATTAGATGAATATAGTTATTTCAAGGAGTCTTGGCGCAAAAAATCATG----AC
250 GCTAAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAAC
*
169456 CGACCTAGGGC
315 TGACCTAGGGC
** * * * * *
169467 CTTGGAAAGCGTTTTTAGCAAAAAACCGAGGTGATTACTGCATGATTTCGGCTAAAATTTTGCAA
1 C-CCGAAAGCGTTTTTAGCCAAAAACCGAGATGATTAGTACACGATTTCGGCTAAAATTTTGC-A
*
169532 AAAATT-ACCCGAAAA-ATTTTTCGTCAATTTTTGGCTAAAATACCCA-AGAAATATATATATAA
64 AAAATTGACCC-AAAAGATTTTTC-TCAATTTTTGG----AATACTCATA-AAA-A-ATATATAA
* * * * *
169594 TTTAACGCCAAAAATATTGGAGGACTTTTCACGCTTTTAATAT-ATTTTTCATATTTTTTCTGAA
120 TTCAACGCCAAAAAAATTGAAGGCCTTTTCACGCTTTTAATATCGTTTTTCATATTTTTT-TGAA
* * * * * *
169658 TTAATGTCTAATTAAATCGAAAAAAGATTCAGA-GACTCATAAAAATAAATTCTTAAATGCAATG
184 TTAATTTCTAATTAAATCGAAACAAGATTTAGATG-CTCGTAAAAACAAATCCTTAAATGCAATG
** *
169722 CAGCTAAGATTTGATTAGATTAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAA
248 TGGCTAAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAA
*
169787 ACCGACCTAGGGC
313 ACTGACCTAGGGC
** * * * *
169800 CTTGGAAAGCGTTTTTAGCCAAAAATCGAGGTGATTATTACACGATTTCGGCTAAAATTTTGTAA
1 C-CCGAAAGCGTTTTTAGCCAAAAACCGAGATGATTAGTACACGATTTCGGCTAAAATTTTGCAA
169865 AAATTGACCCAAAAGATATTTTAC-CAATTTTTGG-ATACTCATAAAAAATATATAATTCAACGC
65 AAATTGACCCAAAAGAT-TTTT-CTCAATTTTTGGAATACTCATAAAAAATATATAATTCAACGC
* *
169928 TAAAAAAATTGAAGGCCTTTTCAAC-CTTTTAATATCGTTTTTCATATTTTTTATGAAATAATTT
128 CAAAAAAATTGAAGGCCTTTTC-ACGCTTTTAATATCGTTTTTCATATTTTTT-TGAATTAATTT
* *
169992 CTAATTAAATCGAAACAAGATTTAAATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTAAT
191 CTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTAAG
** * * * * *
170057 ATTTTTTTATATGAATATAGATATTTCAAGGAGTATTTGCGCAAAAAATCATGCAAAATTGA-GT
256 ATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAACTGACCT
* *
170121 CGAGC
321 AGGGC
* * * * * * **
170126 CTCAGAACGCGTTTTTAGCCGAAAA-CAATGGTGGTTAGTACACGATTTTAGCTAAAATTTTGCA
1 C-CCGAAAGCGTTTTTAGCCAAAAACCGA-GATGATTAGTACACGATTTCGGCTAAAATTTTGCA
* *
170190 AAAATTGACCCAAAAGATTTTTTCTCAATTTCTAGCGAAAATACTCAT-AAAAATATAAAATTCA
64 AAAATTGACCCAAAAGA-TTTTTCTCAATTT-TTG-G--AATACTCATAAAAAATATATAATTCA
* * * * * **
170254 ATGCCAAAAAAATTGAAAGCTTTTTTCACGCTTCTAATATCGCTTTTT-ATCTTATTTTACAATT
124 ACGCCAAAAAAATTGAAGGC-CTTTTCACGCTTTTAATATCG-TTTTTCATATT-TTTTTGAATT
* * * *
170318 AATTTTTGATTAAATCGAAACAAGATTTATATACTCGTAAAAACAAATCCTTAAATGCAATGTGG
186 AATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGG
* * * * * ***
170383 CTGAGATTTGGTTAGATAAATATAGATATATTTTAAAGAGTCTTATTGTC-AAAAATCATGCAAA
251 CTAAGATTTGATTAGATGAATATAG--ATATTTCAAGGAGTCTTGGCG-CAAAAAATCATGCAAA
170447 ACTGAC
313 ACTGAC
170453 TCGGATTTGG
Statistics
Matches: 2760, Mismatches: 421, Indels: 303
0.79 0.12 0.09
Matches are distributed among these distances:
325 3 0.00
326 154 0.06
327 262 0.09
328 100 0.04
329 336 0.12
330 127 0.05
331 276 0.10
332 144 0.05
333 305 0.11
334 16 0.01
335 98 0.04
336 99 0.04
337 21 0.01
338 14 0.01
339 64 0.02
340 97 0.04
341 198 0.07
342 273 0.10
343 46 0.02
344 14 0.01
345 34 0.01
346 50 0.02
347 26 0.01
348 3 0.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (325 bp):
CCCGAAAGCGTTTTTAGCCAAAAACCGAGATGATTAGTACACGATTTCGGCTAAAATTTTGCAAA
AATTGACCCAAAAGATTTTTCTCAATTTTTGGAATACTCATAAAAAATATATAATTCAACGCCAA
AAAAATTGAAGGCCTTTTCACGCTTTTAATATCGTTTTTCATATTTTTTTGAATTAATTTCTAAT
TAAATCGAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGCTAAGATTTG
ATTAGATGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAATCATGCAAAACTGACCTAGGGC
Done.