Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015653.1 Corchorus olitorius cultivar O-4 contig15686, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6698
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Found at i:857 original size:2 final size:2

Alignment explanation


    Indices: 850--884  Score: 61
    Period size: 2  Copynumber: 17.5  Consensus size: 2

        840 TCATTAAACT

                           *                                    
        850 TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        885 TGACTAATAT


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   31  1.00

ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49


Consensus pattern (2 bp):   
TA

Done.