Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015655.1 Corchorus olitorius cultivar O-4 contig15688, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53227

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2193--2283
46
2.0
46
100
0
182
36
19
24
19
1.95
5535--5580
22
2.1
22
100
0
92
45
15
4
34
1.66
11066--11121
24
2.3
24
93
0
94
16
5
55
23
1.61
14380--14637
135
1.9
135
100
0
516
34
13
17
34
1.89
19143--19224
39
2.1
39
90
0
128
42
15
34
7
1.75
19147--19235
39
2.2
40
88
6
126
44
16
31
6
1.74
22150--22175
13
2.0
13
100
0
52
23
30
0
46
1.53
29615--29665
16
3.4
16
75
25
65
5
0
35
58
1.22
29629--29678
13
3.6
13
76
23
57
6
0
30
64
1.18
29615--29683
29
2.4
29
100
0
138
5
0
34
59
1.21
35752--35782
1
31.0
1
100
0
62
100
0
0
0
0.00
36493--36527
2
17.5
2
100
0
70
48
0
0
51
1.00
40293--41304
330
3.0
327
81
6
1092
37
14
14
33
1.87
39430--41304
667
2.8
657
76
8
1864
37
14
13
33
1.86
45507--45562
23
2.5
23
91
2
87
33
5
14
46
1.67
45556--45632
22
3.6
20
76
10
64
45
7
6
40
1.59
45677--45703
12
2.2
12
100
0
54
59
7
7
25
1.51
49516--49541
8
3.2
8
100
0
52
26
23
0
50
1.50
50894--53223
332
7.0
329
78
8
2046
32
14
15
37
1.88
50237--53193
993
3.0
983
77
8
2760
32
14
15
37
1.88

Tables:   1

The End!