Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015660.1 Corchorus olitorius cultivar O-4 contig15693, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 882

Length: 1470
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.32


Found at i:64 original size:12 final size:12

Alignment explanation


    Indices: 41--74  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

         31 CCAAACGCTA

                         
         41 GGCCAGGCGCATG
          1 GGCCA-GCGCATG

                        
         54 GGCCAGCGCATG
          1 GGCCAGCGCATG

             *       
         66 GCCCAGCGC
          1 GGCCAGCGC

         75 CTAGGCTAAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  12   15  0.75
  13    5  0.25

ACGTcount: A:0.15, C:0.38, G:0.41, T:0.06


Consensus pattern (12 bp):   
GGCCAGCGCATG

Found at i:196 original size:24 final size:26

Alignment explanation


    Indices: 155--202  Score: 66
    Period size: 24  Copynumber: 1.9  Consensus size: 26

        145 GCCCAATGTG

                                      
        155 AAATAAAAGAAAGAAATAA-AAATAA
          1 AAATAAAAGAAAGAAATAAGAAATAA

                                     
        180 AAAT-AAAGAAA-ATAATAAGAAAT
          1 AAATAAAAGAAAGA-AATAAGAAAT

        203 TTTAGAATAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  23    1  0.05
  24   12  0.57
  25    8  0.38

ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15


Consensus pattern (26 bp):   
AAATAAAAGAAAGAAATAAGAAATAA
Done.