Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015661.1 Corchorus olitorius cultivar O-4 contig15694, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112315

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
163--197
2
17.5
2
93
0
61
45
0
2
51
1.16
3787--4282
250
2.0
250
96
0
920
38
9
14
36
1.80
11327--11396
34
2.1
33
91
2
113
27
15
7
50
1.70
11630--11662
12
2.6
13
85
9
50
12
0
18
69
1.18
11944--11998
29
2.0
27
82
10
67
38
23
12
25
1.90
12292--12316
2
12.5
2
100
0
50
48
0
0
52
1.00
13469--13495
2
13.5
2
100
0
54
51
0
0
48
1.00
17098--17404
103
3.0
102
87
3
445
37
16
11
34
1.85
21069--21196
64
2.0
64
98
0
247
33
21
22
21
1.97
21676--21774
50
2.0
50
100
0
198
35
16
6
42
1.73
23338--23427
45
2.0
45
93
0
153
18
24
13
43
1.86
24507--24544
17
2.2
17
100
0
76
28
5
42
23
1.76
28828--28852
12
2.1
12
100
0
50
48
20
32
0
1.50
29221--29247
8
3.4
8
100
0
54
22
51
0
25
1.48
33836--33865
2
15.0
2
100
0
60
50
0
0
50
1.00
34106--34131
2
13.0
2
100
0
52
50
0
0
50
1.00
36311--36424
56
2.0
57
91
6
187
43
20
7
28
1.79
46166--46200
15
2.4
15
85
4
54
45
8
20
25
1.79
46190--46234
15
3.0
15
81
12
56
37
13
11
37
1.80
46948--47258
164
1.9
164
93
2
545
41
9
10
38
1.72
49751--49776
13
2.0
13
100
0
52
30
23
30
15
1.95
50149--50198
22
2.2
23
89
3
75
18
10
28
44
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55602--55645
21
2.1
21
87
8
63
34
0
36
29
1.58
60173--60282
56
2.0
56
96
0
202
35
21
1
40
1.64
62373--62403
12
2.5
13
89
10
55
0
12
0
87
0.55
62373--62406
8
4.1
8
88
3
50
0
11
0
88
0.52
62373--62406
17
2.0
17
88
11
52
0
11
0
88
0.52
70779--71071
111
2.6
112
87
1
410
20
18
18
42
1.89
99152--99199
20
2.5
18
78
21
53
39
4
6
50
1.47
99937--99974
18
2.1
18
100
0
76
26
26
0
47
1.52
106971--109329
331
7.2
327
75
11
1775
32
14
16
36
1.88
111035--111106
37
1.9
37
94
0
126
37
8
16
37
1.79

Tables:   1

The End!