Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015664.1 Corchorus olitorius cultivar O-4 contig15697, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44677

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1475--1547
16
4.5
17
76
10
73
8
12
38
41
1.73
1556--1596
16
2.5
17
76
15
50
4
14
36
43
1.67
3211--5005
334
5.4
329
77
8
1639
33
14
16
35
1.90
13017--13157
70
2.0
70
97
1
266
39
11
19
29
1.87
13901--13975
29
2.4
32
86
10
102
30
24
9
36
1.87
16395--16437
2
22.5
2
82
17
56
51
2
0
46
1.13
16583--16638
29
1.9
29
96
0
103
21
3
30
44
1.69
17839--17884
24
1.9
24
82
8
58
28
26
23
21
1.99
20632--20705
22
3.1
22
64
17
58
17
17
16
48
1.81
20627--20731
49
2.1
49
94
3
185
19
16
14
50
1.78
34545--34583
20
2.0
20
94
0
69
56
5
0
38
1.22
34633--34697
33
2.0
33
84
0
85
12
29
38
20
1.89
34814--34855
18
2.4
17
81
14
50
47
0
19
33
1.49
41504--41834
166
2.0
166
93
1
574
22
16
33
27
1.96
41905--41934
15
2.0
15
100
0
60
26
13
26
33
1.93
41922--42024
52
2.0
52
94
0
179
21
12
34
31
1.91
41715--42192
211
2.2
215
89
5
715
22
17
33
26
1.96
42125--42154
15
2.0
15
100
0
60
26
13
26
33
1.93
42193--42242
26
1.9
26
87
0
73
30
20
40
10
1.85
42367--42656
142
2.0
142
97
0
544
27
14
35
22
1.93
42905--43048
71
2.0
71
95
0
261
32
12
21
33
1.91

Tables:   1

The End!