Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015667.1 Corchorus olitorius cultivar O-4 contig15700, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44747

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
875--932
19
2.9
20
79
5
64
36
13
18
31
1.90
2732--2766
14
2.5
14
90
0
52
17
11
0
71
1.14
6803--6918
59
2.0
59
88
6
173
30
23
8
37
1.85
7747--8631
296
3.0
295
88
2
1314
43
16
15
24
1.87
15402--15481
31
2.5
32
83
4
99
12
11
36
40
1.79
15471--15548
6
13.3
6
76
10
72
6
17
43
32
1.75
15475--15547
29
2.5
28
75
14
76
6
17
45
30
1.75
15661--15716
13
4.7
12
75
14
53
53
3
1
41
1.29
16577--17165
295
2.0
293
89
2
903
42
16
16
24
1.88
22860--22930
29
2.4
29
97
0
133
38
9
8
43
1.68
27624--27667
18
2.4
18
85
7
54
25
29
9
36
1.86
28965--28989
11
2.3
11
100
0
50
84
8
8
0
0.79
31042--31081
20
2.0
20
100
0
80
65
0
10
25
1.24
41001--41030
2
15.0
2
100
0
60
50
0
0
50
1.00
42252--42289
11
3.5
11
89
10
51
39
0
2
57
1.12

Tables:   1

The End!