Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015670.1 Corchorus olitorius cultivar O-4 contig15703, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 85473
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:692 original size:329 final size:323
Alignment explanation
Indices: 1--1269 Score: 1279
Period size: 330 Copynumber: 3.8 Consensus size: 323
* * * *
1 AAATATCAATATTTATCTAATCAAATCTTAGCCACATTGGATTTAAGTATTTATTTTTACGACCA
1 AAATATC-ATATTCATCTAATCAAATCTTAGCCACATTGGATTTAAG-ATTTGTTTTTACAAGCA
* ** * * * * * *
66 TATGAATCTGGTTTTGATTTAATCAGAAGTTAATTCGGAAAAAATAGGAAAAACGATATTAGATG
64 TCTGAATCTTATTTCGATTTAATTAGAAATTAATTCAG-AAAAATAGGAAAAACGATATTAAAAG
* * * *
131 TC-TCAAAAGTCCTTCAATATTTTTGGCATTGAATTATATATTCTTTATGACTATTTTAGCCAAA
128 -CGTCAAAAGTCCTCCAAT-CTTTTGGC-TTGAATTATATATT-TTTATGAGTATTTTAGCAAAA
* * * *
195 AATTGAGGA-AATTTCTTTCGGGTCAATTTTTGCAATATTTTAGCTGAAATGGTGTGTATTAACC
189 AATTGAGGAGAA-ATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAAT--CGTGTATTAACC
* * * * *
259 TTTACAGTTTTTGGCTAAAAACGCGTTTCGGGGCTCCGAT-TCAGTTTTTCATGATTTTTAGCGC
251 ATCATAGTTTTTGGCTAAAAACGCGTTTCGGGGC-CC-ATCTCAGTTTTGCATGATTTTGAGCG-
323 CAAGACTCCTTG
313 -AAGACTCCTTG
* * *
335 AGATATCCCTATTCATCTAATCAAATCTTAGCCACATTGGATATAAGACTTTGTTTTTACAAGCA
1 AAATAT-CATATTCATCTAATCAAATCTTAGCCACATTGGATTTAAGA-TTTGTTTTTACAAGCA
* * *
400 TCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCAGAAAGATATGAAAAACG-TCATTAAAAG
64 TCTGAATCTTATTTCGATTTAATTAGAAATTAATTCAGAAAAATAGGAAAAACGAT-ATTAAAAG
* * *
464 CGTGAAAAGTCCTCCAATCTATTTGGCTCTGAATTATATATTTTTATGAGTATTTTCGTAAAAAA
128 CGTCAAAAGTCCTCCAATCT-TTTGGCT-TGAATTATATATTTTTATGAGTATTTTAGCAAAAAA
* *
529 TTGAGGAGAAATCTTTCGTGTCAATTTTTGCAAAAATTTAGCCG-AATCGTGTATTAACCATCAT
191 TTGAGGAGAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTATTAACCATCAT
* * * * * *
593 GGTATTTGGCTAAAAATGCGTTTCGGGGACCCATCTCTGTTTTGCATGATTTCTGATGTGGAGAC
256 AGTTTTTGGCTAAAAACGCGTTTCGGGG-CCCATCTCAGTTTTGCATGATTT-TGA-GCGAAGAC
*
658 TACTTG
318 TCCTTG
* * *
664 AAATATCTATATTTATCTAATCAAATCTTAGTCACAATGGATTTAATGATTTGTTTTTACAAGCA
1 AAATATC-ATATTCATCTAATCAAATCTTAGCCACATTGGATTTAA-GATTTGTTTTTACAAGCA
* * * **
729 TTTTAATCTTATTTCGATTTAATTAAAAATTAATTC-GAAAAACATAGGAAAAACGATATTAGTA
64 TCTGAATCTTATTTCGATTTAATTAGAAATTAATTCAG-AAAA-ATAGGAAAAACGATATTAAAA
* * * *
793 GCGTCAAAAGTCCTTCAATCCTTTTGGCTTTAAATTATATTTTTTTATTAGTATTTTAGCCAAAA
127 GCGTCAAAAGTCCTCCAAT-CTTTTGGC-TTGAATTATATATTTTTATGAGTATTTTAG-CAAAA
* * * **
858 AA-TGAGGAAAAATATTTCGGGTCAATTTTTGTAAAATTTTAGCCGAAATCGTGTACGTT-ATTA
189 AATTGAGGAGAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTA--TTAACCA
* * *
921 TCATAGTTTTTGGCTAAAAACACGTTTCGAGGCCC-TGCTCAGCTTTGCATGATTTTTG-GCGCC
252 TCATAGTTTTTGGCTAAAAACGCGTTTCGGGGCCCAT-CTCAGTTTTGCATGA-TTTTGAGCG--
984 AAGACTCCTTG
313 AAGACTCCTTG
* * * * *
995 AGATATACATATCCATCTAATCAAATCTTAGCTACATTGGATTTCACA-ATTTGTTTTGACGAGC
1 AAATAT-CATATTCATCTAATCAAATCTTAGCCACATTGGATTT-A-AGATTTGTTTTTACAAGC
* * *
1059 ATCTGAATCTTATTTCGATTTAATTAGAAATTTATTCA-AACAAATATGAAAAACAATATTAAAA
63 ATCTGAATCTTATTTCGATTTAATTAGAAATTAATTCAGAA-AAATAGGAAAAACGATATTAAAA
* * * * * * *
1123 ACTTGAAAAGTCTTCCAATCTTTATAGTG-TTGAATTATATATTTTTAAGAGCATTTTAGTAAAA
127 GCGTCAAAAGTCCTCCAATCTTT-T-G-GCTTGAATTATATATTTTTATGAGTATTTTAGCAAAA
* * * *
1187 AATTGAGGAGAAATCTTT-GGTGTCATTTTTTACAAAATTTTAGCCGAAATCATGTACTAACCAT
189 AATTGAGGAGAAATCTTTCGG-GTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTATTAACCAT
* **
1251 CATGGTTTTTTACTAAAAA
253 CATAGTTTTTGGCTAAAAA
1270 TGTGTTCCGG
Statistics
Matches: 779, Mismatches: 119, Indels: 79
0.80 0.12 0.08
Matches are distributed among these distances:
328 5 0.01
329 186 0.24
330 211 0.27
331 137 0.18
332 94 0.12
333 59 0.08
334 86 0.11
335 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.15, T:0.38
Consensus pattern (323 bp):
AAATATCATATTCATCTAATCAAATCTTAGCCACATTGGATTTAAGATTTGTTTTTACAAGCATC
TGAATCTTATTTCGATTTAATTAGAAATTAATTCAGAAAAATAGGAAAAACGATATTAAAAGCGT
CAAAAGTCCTCCAATCTTTTGGCTTGAATTATATATTTTTATGAGTATTTTAGCAAAAAATTGAG
GAGAAATCTTTCGGGTCAATTTTTGCAAAATTTTAGCCGAAATCGTGTATTAACCATCATAGTTT
TTGGCTAAAAACGCGTTTCGGGGCCCATCTCAGTTTTGCATGATTTTGAGCGAAGACTCCTTG
Found at i:2831 original size:25 final size:25
Alignment explanation
Indices: 2794--2849 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
2784 GCAGGCGCTG
* *
2794 AGCAAACGCGCCTGTGCTTGCGTTT
1 AGCAAAAGAGCCTGTGCTTGCGTTT
2819 AGCAAAAGAGCCTGTGCTTGCGTTT
1 AGCAAAAGAGCCTGTGCTTGCGTTT
2844 AGCAAA
1 AGCAAA
2850 CACATGGGCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (25 bp):
AGCAAAAGAGCCTGTGCTTGCGTTT
Found at i:7952 original size:333 final size:329
Alignment explanation
Indices: 6423--8602 Score: 1914
Period size: 332 Copynumber: 6.5 Consensus size: 329
6413 TGGTAAAAAA
* * * *
6423 GACCCGAAAGATTTTTCCT-CAATTTTTGACAAAAATACTCATAAAATATATATAATTCAACGCC
1 GACCCGAAAAATTTTT-CTGCAATTTTTGGCTAAAATACTCATAAAATATATATAATTCAATGCC
* * * *
6487 AACAAGATTTGAGGACTTTTCACGCTTTTAATATTGTTTTTCATTTTTTTCTGAATTAATTTCTA
65 AAAAAAATTGGAGGACTTTTCACGCTTTTAATATTGTTTTTTA-TTTTTTCTGAATTAATTTCTA
*
6552 ATTAAATCGATACAAGATTCAGATGCAT-ATAAAAACAAA-TCGTTAAATCCAATGTGGCTGAGA
129 ATTAAATCGAAACAAGATTCAGATGC-TCATAAAAACAAATTC-TTAAATCCAATGTGGCTGAGA
* * ** * *
6615 TTTTATTAGATGAATAAAGATATTTCAAGGAGTCCCGGCGCCAAAAATCATGCAAAACAGAGCCG
192 TTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCG
* * * *
6680 TGGCCTTGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAGACGATTTTGGCTAAAATTTT
257 GGGCC-CGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
*
6745 GCAAAAATT
321 ACAAAAATT
* * * * * * * **
6754 GACCCGAAAGATATTTCTTCAATTTTTGGCTAAAATACTTATAAAAAATATATGATTCGATATCA
1 GACCCGAAAAATTTTTCTGCAATTTTTGGCTAAAATACTCATAAAATATATATAATTCAATGCCA
* * * * * * * * *
6819 AAAAAATTGAAGGGCTTTTAATGATTCTAATATTGTTTTTCCTATGTCTTTCCGAATTAATTTCC
66 AAAAAATTGGAGGACTTTTCACGCTTTTAATATTGTTTTT--TAT-TTTTTCTGAATTAATTTCT
* * * *
6884 AATTAAGTCGAAACAAGATTCAGATGCTCATAAAAACAAA-TCTTTAAATCTAATATGGCTAAGA
128 AATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATTC-TTAAATCCAATGTGGCTGAGA
* * * *
6948 TTCCG-TTAGATAAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGAGGC
192 TT-TGATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCC
** * * * *
7012 GGATCCCGGAACGTGTTTTTAGTCGAAAACCGTGATGGTTAGTACACGATTTCTGCTAAAATTTT
256 GGGGCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTT
*
7077 TCAAAAATT
321 ACAAAAATT
* * *
7086 GACCCGAAAAATTTTTCGTTG--ATTTCTAGCGAAAATACTCATAAAA-ATATATAATTCAATGC
1 GACCCGAAAAATTTTTC--TGCAATTTTTGGCTAAAATACTCATAAAATATATATAATTCAATGC
** * * * * *
7148 CAAAAAAA-T-GAAAACCTTTTCACGCTTCTAATATCGTTTTCCTATTTTTTTTCAAATTAATTT
64 CAAAAAAATTGGAGGA-CTTTTCACGCTTTTAATATTGTTTT-TTATTTTTTCT-GAATTAATTT
* * * * * *
7211 CTAATTAAATCGAAACATGATTCAAATGCTCACAAAAACAAATCCTTAAAT-CAAGTGTGGATAA
126 CTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATTCTTAAATCCAA-TGTGGCTGA
* * * * *
7275 GATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTGCCACCAAAAATCATGCAAAACTGACC
190 GATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGC
* *
7340 CGGGGCCCCGGAACGCATTTTTAGCCAAAAAACTGTGAT-G---GTACACGATTTCGGCTAAAAT
255 CGGGG-CCCGGAACGCGTTTTTAGCC-AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAT
*
7401 ATTACAAAAATT
318 TTTACAAAAATT
* * * * * * **
7413 GATCCGAAATATTTTGTCT-CAATTTTTAGCCACAACACTCATAAAATATATATAATTCAACACC
1 GACCCGAAAAATTTT-TCTGCAATTTTTGGCTAAAATACTCATAAAATATATATAATTCAATGCC
* * * * *
7477 AAAAAGACTGGAGGACTTTTCACGTTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTA
65 AAAAAAATTGGAGGACTTTTCACGCTTTTAATATTGTTTTTTAT-TTTTTCTGAATTAATTTCTA
* * * * *
7542 ATTAAATCGAAACAAAATTCAGAGGCTCGTAAAAACAAATCCTTAAATTCAATGTGGCTGAGATT
129 ATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATTCTTAAATCCAATGTGGCTGAGATT
* * * * ** *
7607 TGATTAGATGAATATAAATATTTCAAGAAGTCTCGGCGGAAAAAATCATGCAAAACTAAGCCTGG
194 TGATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCC-GG
* * * * *
7672 GGCTCGAAACGCGTTTTTAGACAAAAACCAG-GATGGTTAGTATACGATTTCGGCTAAAATTTTG
258 GGCCCGGAACGCGTTTTTAGCCAAAAACC-GTGATGGTTAGTACACGATTTCGGCTAAAATTTTA
7736 CAAAAATT
322 CAAAAATT
* * * *
7744 GATCCGAAAAATTTTTCTGAAATTTTTTGGCTAAAATACTCATAAAATCTATATAATTTAATGCC
1 GACCCGAAAAATTTTTCTGCAA-TTTTTGGCTAAAATACTCATAAAATATATATAATTCAATGCC
* * *
7809 AAAAAAATTGGAGAACTTTTCACGCTTTTATTATTATTATTATTATTATTTTCTGAATTAATTT-
65 AAAAAAATTGGAGGACTTTTCACGCTTTTAATATTGTT-TT-TTATT-TTTTCTGAATTAATTTC
* * * *
7873 TTATTAAATCG-AACTAAGATTCAGATGCTCATAAAATCAAATTCTTAAATCCAATGTTGCTGAT
127 TAATTAAATCGAAAC-AAGATTCAGATGCTCATAAAAACAAATTCTTAAATCCAATGTGGCTGAG
* * * *
7937 ATTTGATTAGATGAATATGGATATCTCAAAGAGTCTTGACGCCAAAAATCATGCAAAACTGAGTC
191 ATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCC
* * * ** * * * *
8002 GGAGTCCCGAAACGTGACTTTAGCCAAAAACCATGATGATTA-TCAAACGATTTCGGCTAGAATT
256 GG-GGCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGT-ACACGATTTCGGCTAAAATT
8066 TTACAAAAATT
319 TTACAAAAATT
* * * * * * * **
8077 GACTCG-AAAGTTATCTCCT-CAATTTTTAGCCACAACACTCATTAAAAT-TATATAATTCAACA
1 GACCCGAAAAATT-T-TTCTGCAATTTTTGGCTAAAATACTCA-TAAAATATATATAATTCAATG
* * * * * * * *
8139 CCAATAAGATTGAAGGGCTTTTCATGCTTCTAATATCGTTTTTCCTATTATTTTTTGAATTAATT
63 CCAAAAAAATTGGAGGACTTTTCACGCTTTTAATATTGTTTTT--TATT-TTTTCTGAATTAATT
* * * ** *** *
8204 TCTGATTAAATCAAAACATGATTCAGATGCTTGT-TTTAGAAA-TCGTTAAATCCAATGTGGCTG
125 TCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATTC-TTAAATCCAATGTGGCTG
* * * * *
8267 AGATTTGGTTAGATGAATATAGATATTTCAAGGGGTC-TCAGCGCCAAAATTCATGCAACACTGT
189 AGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGA-CGCCAAAAATCATGCAAAACTG-
* * * * * *
8331 A-CTGGGACCCCGGAACGCGTTTTTAGCAAAAAAAAAAAAAAAATCCCGTAATTTCGACTAACGT
252 AGCCGGG-GCCCGGAACGCGTTTTTAGC----------CAAAAA--CCGTGA--T-G-GTTA-GT
* ** * **
8395 ACATGATTTTTGCTAATATTTTGTAAAAATT
299 ACACGATTTCGGCTAAAATTTTACAAAAATT
* ** * * * *
8426 GACCAGAAGTATTTTACCT-CAATTTTTGTCTATAATACTCATAAAATATATATATTTCAATGCC
1 GACCCGAAAAATTTT-TCTGCAATTTTTGGCTAAAATACTCATAAAATATATATAATTCAATGCC
* * * * * *
8490 AAAAAGATTGCAGGACTTTTCACTCTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCAA
65 AAAAAAATTGGAGGACTTTTCACGCTTTTAATATTGTTTTTTAT-TTTTTCTGAATTAATTTCTA
* * * * *
8555 ATTAAATCAAAACAAGATTCAGATGTTCGTAAAAACACATCCTTAAAT
129 ATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATTCTTAAAT
8603 ACATAGTTTT
Statistics
Matches: 1488, Mismatches: 287, Indels: 131
0.78 0.15 0.07
Matches are distributed among these distances:
326 1 0.00
327 73 0.05
328 166 0.11
329 160 0.11
330 50 0.03
331 166 0.11
332 338 0.23
333 332 0.22
334 26 0.02
342 5 0.00
344 4 0.00
346 1 0.00
347 46 0.03
348 19 0.01
349 97 0.07
350 4 0.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (329 bp):
GACCCGAAAAATTTTTCTGCAATTTTTGGCTAAAATACTCATAAAATATATATAATTCAATGCCA
AAAAAATTGGAGGACTTTTCACGCTTTTAATATTGTTTTTTATTTTTTCTGAATTAATTTCTAAT
TAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATTCTTAAATCCAATGTGGCTGAGATTTG
ATTAGATGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAACTGAGCCGGGGC
CCGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTACAAA
AATT
Found at i:8569 original size:990 final size:977
Alignment explanation
Indices: 6426--8364 Score: 2177
Period size: 990 Copynumber: 2.0 Consensus size: 977
6416 TAAAAAAGAC
* * * * * * *
6426 CCGAAAGATTTTTCCTCAATTTTT-GACAAAAATACTCATAAAATATATATAATTCAACGCCAAC
1 CCGAAATATTTTACCTCAATTTTTAG-CCACAACACTCATAAAATATATATAATTCAACACCAAA
* * * *
6490 AAGATTTG-AGGACTTTTCACGCTTTTAATATTGTTTTTCATTTTTTTCTGAATTAATTTCTAAT
65 AAGA-CTGCAGGACTTTTCACGTTTTTAATATCGTTTTTCATATTTTTCTG-A--AA-TTCTAA-
* * * *
6554 TAAATCGATACAAGATTCAGATGCATATAAAAACAAATCGTTAAATCCAATGTGGCTGAGATTTT
124 T---T--ATACAAAATTCAGA-G-AT-CAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTG
* *
6619 ATTAGATGAATAAAGATATTTCAAGGAGTCCCGGCGCCAAAAATCATGCAAAACAGAGCCGTGGC
181 ATTAGATGAATAAAGATATTTCAAGAAGTCCCGGCGCAAAAAATCATGCAAAACAGAGCCGTGGC
* * * *
6684 CTTGGAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAGACGATTTTGGCTAAAATTTTGCAA
246 CTCGAAACGCGTTTTTAGACAAAAACCGTGATGGTTAGTAGACGATTTCGGCTAAAATTTTGCAA
* ** * * *
6749 AAATTGACCCGAAAGATATTTCTTCAATTTTTGGCTAAAATACTTATAAAAAATATATGATTCGA
311 AAATTGACCCGAAAAATATTTCTGAAATTTTTGGCTAAAATACTCATAAAAAATATATAATTCAA
* ** * * * *
6814 TATCAAAAAAATTGAAGGGCTTTTAATGATTCTAATATTGTTTTTCCTATGTCTTTCCGAATTAA
376 TACCAAAAAAATTGAAGAACTTTTAACGATTCTAATATTATTATTACTATGTCTTTCCGAATTAA
* *
6879 TTTCCAATTAAGTCGAAACAAGATTCAGATGCTCATAAAAACAAATCTTTAAATCTAATATGGCT
441 TTTCCAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCTTTAAATCCAATATGGCT
* *
6944 AAGATTCCGTTAGATAAATATAGATATTTCAAGGAGTCTTGACACCAAAAATCATGCAAAACTGA
506 AAGATTCCGTTAGATAAATATAGATATCTCAAAGAGTCTTGACACCAAAAATCATGCAAAACTGA
* ** * * * * * *
7009 GGCGGATCCCGGAACGTGTTTTTAGTCGAAAACCGTGATGGTTAGTACACGATTTCTGCTAAAAT
571 GGCGGATCCCGAAACGTGACTTTAGCCAAAAACCATGATGATTAGTAAACGATTTCGGCTAAAAT
* * * ** * *
7074 TTTTCAAAAATTGACCCGAAAAATTTTTCGTTGATTTCTAGCGAAAATACTCATAAAAATATATA
636 TTTACAAAAATTGACCCGAAAAATTTCTCCTCAATTTCTAGCCAAAACACTCATAAAAATATATA
**
7139 ATTCAATGCCAAAAAAATGAAAACCTTTTCACGCTTCTAATATCGTTTTCCTATTTTTTTTCAAA
701 ATTCAACACCAAAAAAATGAAAACCTTTTCACGCTTCTAATATCGTTTTCCTATTTTTTTTCAAA
*
7204 TTAATTTCTAATTAAATCGAAACATGATTCAAATGCTCACAAAAACAAATCCTTAAATCAAGTGT
766 TTAATTTCTAATTAAATCAAAACATGATTCAAATGCTCACAAAAACAAATCCTTAAATCAAGTGT
**
7269 GGATAAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTTTGCCACCAAAAATCATGCAAAA
831 GGATAAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTTCAGCCACCAAAAATCATGCAAAA
* * *
7334 CTGACCCGGGGCCCCGGAACGCATTTTTAGCCAAAAAACTGTGATGGTACACGATTTCGGCTAAA
896 CTGACCCGGGACCCCGGAACGCATTTTTAGCAAAAAAACTGTGATCGTACACGATTTCGGCTAAA
7399 ATATTACAAAAATTGAT
961 ATATTACAAAAATTGAT
**
7416 CCGAAATATTTTGTCTCAATTTTTAGCCACAACACTCATAAAATATATATAATTCAACACCAAAA
1 CCGAAATATTTTACCTCAATTTTTAGCCACAACACTCATAAAATATATATAATTCAACACCAAAA
*
7481 AGACTGGAGGACTTTTCACGTTTTTAATATCGTTTTTCATATTTTTCTGAATTAATTTCTAATTA
66 AGACTGCAGGACTTTTCACGTTTTTAATATCGTTTTTCATATTTTTCTG-A--AA-TTCTAATT-
* *
7546 AATCGAAACAAAATTCAGAGGCTCGTAAAAACAAATCCTTAAATTCAATGTGGCTGAGATTTGAT
126 -AT----ACAAAATTCAGA-GATC--AAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGAT
* *
7611 TAGATGAATATAA-ATATTTCAAGAAGTCTCGGCGGAAAAAATCATGCAAAACTA-AGCC-TGGG
183 TAGATGAATA-AAGATATTTCAAGAAGTCCCGGCGCAAAAAATCATGCAAAAC-AGAGCCGT-GG
* *
7673 GCTCGAAACGCGTTTTTAGACAAAAACCAG-GATGGTTAGTATACGATTTCGGCTAAAATTTTGC
245 CCTCGAAACGCGTTTTTAGACAAAAACC-GTGATGGTTAGTAGACGATTTCGGCTAAAATTTTGC
* * **
7737 AAAAATTGATCCGAAAAATTTTTCTGAAATTTTTTGGCTAAAATACTCATAAAATCTATATAATT
309 AAAAATTGACCCGAAAAATATTTCTGAAA-TTTTTGGCTAAAATACTCATAAAAAATATATAATT
* * * * * * * * * *
7802 TAATGCCAAAAAAATTGGAGAACTTTTCACGCTTTTATTATTATTATTATTAT-TATTTTCTGAA
373 CAATACCAAAAAAATTGAAGAACTTTTAACGATTCTAATATTATTATTACTATGT-CTTTCCGAA
** *
7866 TTAATTT-TTATTAAATCG-AACTAAGATTCAGATGCTCATAAAATCAAAT-TCTTAAATCCAAT
437 TTAATTTCCAATTAAATCGAAAC-AAGATTCAGATGCTCATAAAAACAAATCT-TTAAATCCAAT
* * * * * * * *
7928 GTTGCTGATATT-TGATTAGATGAATATGGATATCTCAAAGAGTCTTGACGCCAAAAATCATGCA
500 ATGGCTAAGATTCCG-TTAGATAAATATAGATATCTCAAAGAGTCTTGACACCAAAAATCATGCA
*
7992 AAACTGAGTCGGAGTCCCGAAACGTGACTTTAGCCAAAAACCATGATGATTA-TCAAACGATTTC
564 AAACTGAGGCGGA-TCCCGAAACGTGACTTTAGCCAAAAACCATGATGATTAGT-AAACGATTTC
* * * * *
8056 GGCTAGAATTTTACAAAAATTGACTCG-AAAGTTATCTCCTCAATTTTTAGCCACAACACTCATT
627 GGCTAAAATTTTACAAAAATTGACCCGAAAAATT-TCTCCTCAATTTCTAGCCAAAACACTCA-T
* * * *** *
8120 AAAATTATATAATTCAACACCAATAAGATTGAAGGGCTTTTCATGCTTCTAATATCGTTTTTCCT
690 AAAAATATATAATTCAACACCAA-AAAAATGAAAACCTTTTCACGCTTCTAATATCG-TTTTCCT
* * * ****** *
8185 ATTATTTTTT-GAATTAATTTCTGATTAAATCAAAACATGATTCAGATGCT-TGTTTTAGAAATC
753 ATT-TTTTTTCAAATTAATTTCTAATTAAATCAAAACATGATTCAAATGCTCACAAAAACAAATC
* * * * *
8248 GTTAAATCCAA-TGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGGGTCTCAG-CGC
817 CTTAAAT-CAAGTGTGGATAAGATTTGGTTAGATGAATATAGATATTTCAAGGAGT-TCAGCCAC
* * * *
8311 CAAAATTCATGCAACACTGTA-CTGGGACCCCGGAACGCGTTTTTAGCAAAAAAA
880 CAAAAATCATGCAAAACTG-ACCCGGGACCCCGGAACGCATTTTTAGCAAAAAAA
8365 AAAAAAAAAT
Statistics
Matches: 794, Mismatches: 128, Indels: 51
0.82 0.13 0.05
Matches are distributed among these distances:
986 3 0.00
989 10 0.01
990 404 0.51
991 170 0.21
992 21 0.03
993 128 0.16
994 52 0.07
995 6 0.01
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.33
Consensus pattern (977 bp):
CCGAAATATTTTACCTCAATTTTTAGCCACAACACTCATAAAATATATATAATTCAACACCAAAA
AGACTGCAGGACTTTTCACGTTTTTAATATCGTTTTTCATATTTTTCTGAAATTCTAATTATACA
AAATTCAGAGATCAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATAAAG
ATATTTCAAGAAGTCCCGGCGCAAAAAATCATGCAAAACAGAGCCGTGGCCTCGAAACGCGTTTT
TAGACAAAAACCGTGATGGTTAGTAGACGATTTCGGCTAAAATTTTGCAAAAATTGACCCGAAAA
ATATTTCTGAAATTTTTGGCTAAAATACTCATAAAAAATATATAATTCAATACCAAAAAAATTGA
AGAACTTTTAACGATTCTAATATTATTATTACTATGTCTTTCCGAATTAATTTCCAATTAAATCG
AAACAAGATTCAGATGCTCATAAAAACAAATCTTTAAATCCAATATGGCTAAGATTCCGTTAGAT
AAATATAGATATCTCAAAGAGTCTTGACACCAAAAATCATGCAAAACTGAGGCGGATCCCGAAAC
GTGACTTTAGCCAAAAACCATGATGATTAGTAAACGATTTCGGCTAAAATTTTACAAAAATTGAC
CCGAAAAATTTCTCCTCAATTTCTAGCCAAAACACTCATAAAAATATATAATTCAACACCAAAAA
AATGAAAACCTTTTCACGCTTCTAATATCGTTTTCCTATTTTTTTTCAAATTAATTTCTAATTAA
ATCAAAACATGATTCAAATGCTCACAAAAACAAATCCTTAAATCAAGTGTGGATAAGATTTGGTT
AGATGAATATAGATATTTCAAGGAGTTCAGCCACCAAAAATCATGCAAAACTGACCCGGGACCCC
GGAACGCATTTTTAGCAAAAAAACTGTGATCGTACACGATTTCGGCTAAAATATTACAAAAATTG
AT
Found at i:11427 original size:330 final size:328
Alignment explanation
Indices: 9787--11646 Score: 1497
Period size: 330 Copynumber: 5.7 Consensus size: 328
9777 TGATGTAACA
* * * *
9787 TACACGATTTCAGCT-AAATTTTGTAAAAACTGACCAG-AAAAT-TTTACCTCAATCTTT--ACT
1 TACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAAAATATTT-CCTCAATTTTTGGA-T
* * * * *
9847 -AAATACTCATGAAATATATATAATTTAAC-GCAAAAAGATTGGAA-GACTTTTCACGCTTTTCA
64 AAAATACTCAT-AAAAATATATAATTCAACACCAAAAAGATT-GAAGGGCTTTTCACGCTTTTAA
* * * ** *
9909 TATCGTTTTTCATATTTTTTTTGAATTAATTTGTAATTAAATCGAAACAAGATACAGATACTCGT
127 TATCGTTTTTCATA--TTTTCTCAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGT
* * * * * *
9974 -TAAACAAA-TCATTAAATGCAATGTGGATGAGATTTGATTAGATTAATATGGATATCTCAAGGA
190 AAAAACAAATTC-TTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGA
* ** * * * * ** *
10037 TTCTTAACGCCAAAAATCATGCAAAACTGACTTGGGGCCCTGAAACTAGTTTTTAGTCAAAAAAC
254 GTCTTGGCACCAAAAATCATGCAAAACTGA-GTCGGGCCCCGAAACGCGTTTTTAG-CCAAAAAC
10102 C------G----
317 CGTGATGGTTAT
* * * * **
10104 --CACGATTTCTGCTACAATTTTGCAAAAATTGA-ACGAAAAAAATATTTTTTCAATTTTT-GAC
1 TACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCG--AAAAATATTTCCTCAATTTTTGGA-
* *** * * * *
10165 TAAAATACTCATAAAAAAATATAAAATTCATTGCCAAAAATATTGAAGGGTTTTTTACGCTTCTA
63 TAAAATACTCAT--AAAAATATATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTTTA
* *
10230 ATATCTTTTTTCCTACTTTT-TCCGAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTC
126 ATATCGTTTTTCATA-TTTTCT-C-AATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTC
* * * *
10294 GT-AAAA-AAATCCTTAATTCGAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTGC-AT
188 GTAAAAACAAATTCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTT-CAAG
* * ** * * ** **
10356 GATTTTTGG--CCAAAAATCATGCAAAACTGACCCGCGGCCTCGGAACGCAGTATTGGAAAAAAA
252 GAGTCTTGGCACCAAAAATCATGCAAAACTGAGTCG-GGCCCCGAAACGC-GT-TT----TTAGC
*
10419 AAAAAACCGTGAT-G---T
310 CAAAAACCGTGATGGTTAT
* * * * * * **
10434 TACATGATTTCGGCTAATATTTTGCAAAAATTGACCC-AAAATATTTTTCCTCAAGTTTTAGCCA
1 TACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAAA-ATATTTCCTCAATTTTTGGATA
* * * * * *
10498 CAATACTCATAAAAAATATATAATTCAACGCCAAACAGATTGAAGGGCTTTTCATGCTTCTATTA
65 AAATACTCAT-AAAAATATATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATA
* * * * *
10563 -CTGTTTTTTCTTATTCTTTTTTCCGAATTAATTTCTAATTAAAACGAAACATGATTCAGATGCT
129 TC-G-TTTTTC--A-TATTTTCT-C-AATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCT
* * *
10627 TGT-------AA-----AAA--CAA--TGGCTGGGATTTGGTTAGATGAATATAGATATTTCAAG
187 CGTAAAAACAAATTCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAG
* * *
10676 GAGTCTCGGCACC--AAATCATTCAAAACTGAATCGGGCCCCGAAACGCGTTTTTAGCCAAAAAC
252 GAGTCTTGGCACCAAAAATCATGCAAAACTGAGTCGGGCCCCGAAACGCGTTTTTAGCCAAAAAC
*
10739 CGTGATGATTAT
317 CGTGATGGTTAT
* * * * * * ** *
10751 TACACGATTTCGACTAAAATTTTGCAAAAATTGACCTGAAAGATATTTCCTTAATTTTTAGCCAT
1 TACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAAAATATTTCCTCAATTTTTGGATAA
* * *
10816 AATACTCA-ATAAAAT-TATAATTCGACGCCAAAAAGATTGAAGGGCTTTTCGA-GCTATTAATA
66 AATACTCATA-AAAATATATAATTCAACACCAAAAAGATTGAAGGGCTTTTC-ACGCTTTTAATA
* *
10878 TCGTTTTTCATATTTTTTCTGAATTAATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGT-A
129 TCGTTTTTCATA--TTTTCTCAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAA
* * ** * * * *
10942 AAACAAATCCTTAAATGCAATGTAACTAAGATTTTATTAGATGAATATTGATATTTCAAGGAGTG
192 AAACAAATTCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTC
* **
11007 TCT-GCGCCAAAAATCATGCAAAACTGAGCTAAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGT
257 T-TGGCACCAAAAATCATGCAAAACTGAG-TCGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGT
* *
11071 GAT-GTAACG
320 GATGGTTA-T
* * * * *
11080 TACACGGTTTTGGCTAAAATTCTGTAAAAAATGACCCGAAAAATTTTTCCTCAATTTTTGGATAA
1 TACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAAAATATTTCCTCAATTTTTGGATAA
* *
11145 AATACTCATAAAATATATATAATTTAACACCAAAACA-ATTGGAA-GACTTTTCACGCTTTTAAT
66 AATACTCATAAAA-ATATATAATTCAACACCAAAA-AGATT-GAAGGGCTTTTCACGCTTTTAAT
** * *
11208 ATTATTTTTCATATTTTCTCAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAA
128 ATCGTTTTTCATATTTTCTCAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAA
* *
11273 AACAAATTCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATGGATATCTCAAGGAGTCT
193 AACAAATTCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCT
* * ** * *
11338 TGGCACCAAAAATCAGGCAAAACTGAGTCGGGGTCCTAAAACGCATTTTTAGCCAAAAACTGTGA
258 TGGCACCAAAAATCATGCAAAACTGAGTC-GGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGA
11403 TGGTTAT
322 TGGTTAT
* * *
11410 TACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAAAGTGTTTCCTCAATTTTTGGTTAA
1 TACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAAAATATTTCCTCAATTTTTGGATAA
* * * * *
11475 TATACTTATAAAAAATATATAATTCAACACCAAAAAGATTGAATGGCTTTTGACG-TTCTAATAT
66 AATACTCAT-AAAAATATATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATAT
* * * *
11539 CGTTTTTCCTATTTTTTCCAAATTAAATTCTAATTAAATCGAAACAAGATTTAGATACTCGTAAA
130 CGTTTTTCATATTTTCT-C-AATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAA
* * * *
11604 AACAAATTCATAAATCCAATGTTGCTGAGGTTTGGTTAGATGA
193 AACAAATTCTTAAATCCAATGTGGCTGAGATTTGATTAGATGA
11647 TGTAAAGTGT
Statistics
Matches: 1246, Mismatches: 211, Indels: 158
0.77 0.13 0.10
Matches are distributed among these distances:
311 38 0.03
312 1 0.00
313 18 0.01
314 6 0.00
315 55 0.04
316 22 0.02
317 65 0.05
318 19 0.02
319 47 0.04
320 70 0.06
321 71 0.06
322 84 0.07
324 13 0.01
325 1 0.00
326 40 0.03
328 18 0.01
329 174 0.14
330 263 0.21
331 160 0.13
332 33 0.03
333 5 0.00
334 43 0.03
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.34
Consensus pattern (328 bp):
TACACGATTTCGGCTAAAATTTTGTAAAAATTGACCCGAAAAATATTTCCTCAATTTTTGGATAA
AATACTCATAAAAATATATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATC
GTTTTTCATATTTTCTCAATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTCGTAAAAAC
AAATTCTTAAATCCAATGTGGCTGAGATTTGATTAGATGAATATAGATATTTCAAGGAGTCTTGG
CACCAAAAATCATGCAAAACTGAGTCGGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGT
TAT
Found at i:12139 original size:42 final size:42
Alignment explanation
Indices: 12093--12193 Score: 202
Period size: 42 Copynumber: 2.4 Consensus size: 42
12083 GTGGATTATT
12093 AATATCTTTCCATAATTTGAAATTTTTAAATATTGGATGTAC
1 AATATCTTTCCATAATTTGAAATTTTTAAATATTGGATGTAC
12135 AATATCTTTCCATAATTTGAAATTTTTAAATATTGGATGTAC
1 AATATCTTTCCATAATTTGAAATTTTTAAATATTGGATGTAC
12177 AATATCTTTCCATAATT
1 AATATCTTTCCATAATT
12194 AATAAAAAAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.36, C:0.11, G:0.08, T:0.46
Consensus pattern (42 bp):
AATATCTTTCCATAATTTGAAATTTTTAAATATTGGATGTAC
Found at i:13514 original size:19 final size:19
Alignment explanation
Indices: 13472--13515 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
13462 GTTATTAGTT
13472 AAGAGAGTGAATATGAAGA
1 AAGAGAGTGAATATGAAGA
* *
13491 GAGAGAGTGAATGA-GGAGA
1 AAGAGAGTGAAT-ATGAAGA
13510 AAGAGA
1 AAGAGA
13516 ATAGGGGCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.39, T:0.11
Consensus pattern (19 bp):
AAGAGAGTGAATATGAAGA
Found at i:16989 original size:34 final size:34
Alignment explanation
Indices: 16951--17031 Score: 119
Period size: 33 Copynumber: 2.4 Consensus size: 34
16941 ATTCTGAGTG
*
16951 TTTGTTTAATAAAATTTTGATCTTACTACCTCGT
1 TTTGTTCAATAAAATTTTGATCTTACTACCTCGT
*
16985 TTTG-TCCATAAAATTTTGATCTTACTACCTCGT
1 TTTGTTCAATAAAATTTTGATCTTACTACCTCGT
* *
17018 TTTGTCCAAAAAAA
1 TTTGTTCAATAAAA
17032 AACAACTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
33 31 0.76
34 10 0.24
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.44
Consensus pattern (34 bp):
TTTGTTCAATAAAATTTTGATCTTACTACCTCGT
Found at i:16996 original size:33 final size:33
Alignment explanation
Indices: 16959--17030 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
16949 TGTTTGTTTA
16959 ATAAAATTTTGATCTTACTACCTCGTTTTGTCC
1 ATAAAATTTTGATCTTACTACCTCGTTTTGTCC
16992 ATAAAATTTTGATCTTACTACCTCGTTTTGTCC
1 ATAAAATTTTGATCTTACTACCTCGTTTTGTCC
*
17025 AAAAAA
1 ATAAAA
17031 AAACAACTTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (33 bp):
ATAAAATTTTGATCTTACTACCTCGTTTTGTCC
Found at i:18317 original size:11 final size:11
Alignment explanation
Indices: 18297--18331 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
18287 TTGACAGCGG
18297 AACAAAAACAA
1 AACAAAAACAA
*
18308 AACGAAAACAA
1 AACAAAAACAA
18319 AACAAAAACAA
1 AACAAAAACAA
18330 AA
1 AA
18332 AACAGAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.80, C:0.17, G:0.03, T:0.00
Consensus pattern (11 bp):
AACAAAAACAA
Found at i:21894 original size:3 final size:3
Alignment explanation
Indices: 21886--21915 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
21876 CTTTCGAATT
21886 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
21916 TCACTTAGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (3 bp):
CTC
Found at i:23121 original size:22 final size:21
Alignment explanation
Indices: 23095--23135 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
23085 AGAGAAAACA
23095 AAATCGTTAGTTTGTAACTTGT
1 AAATCGTTAGTTTG-AACTTGT
23117 AAATCGTTAGTTTGAACTT
1 AAATCGTTAGTTTGAACTT
23136 TTCCTTGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (21 bp):
AAATCGTTAGTTTGAACTTGT
Found at i:24253 original size:22 final size:22
Alignment explanation
Indices: 24225--24269 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
24215 CCCTTGCTTC
24225 TACATGGCTCCGTCATTGTCCT
1 TACATGGCTCCGTCATTGTCCT
24247 TACATGGCTCCGTCATTGTCCT
1 TACATGGCTCCGTCATTGTCCT
24269 T
1 T
24270 GTTTGCCGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.13, C:0.31, G:0.18, T:0.38
Consensus pattern (22 bp):
TACATGGCTCCGTCATTGTCCT
Found at i:27391 original size:22 final size:21
Alignment explanation
Indices: 27360--27400 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
27350 TAAAAAAAAA
27360 AAATCCTTAGTTTGCAACTTGT
1 AAATCCTTAGTTTG-AACTTGT
*
27382 AAATCGTTAGTTTGAACTT
1 AAATCCTTAGTTTGAACTT
27401 TTCCTTGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (21 bp):
AAATCCTTAGTTTGAACTTGT
Found at i:28028 original size:54 final size:54
Alignment explanation
Indices: 27948--28054 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
27938 GAACAAAATG
* *
27948 AATCAATACTATTATATGGTCAAGGCTTTTTTTCCAAAAA-CAAAAGACAAGAAA
1 AATCAATACTATTATATGGTCAAGGC-TTTTTTCCAAAAAGAAAAAAACAAGAAA
28002 AATCAATACTATTATATGGTCAAGGCTTTTTTCCAAAAAGAAAAAAACAAGAA
1 AATCAATACTATTATATGGTCAAGGCTTTTTTCCAAAAAGAAAAAAACAAGAA
28055 GAAGAAGACG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
53 13 0.26
54 37 0.74
ACGTcount: A:0.48, C:0.14, G:0.11, T:0.27
Consensus pattern (54 bp):
AATCAATACTATTATATGGTCAAGGCTTTTTTCCAAAAAGAAAAAAACAAGAAA
Found at i:39730 original size:29 final size:29
Alignment explanation
Indices: 39691--39750 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
39681 TTCAATAACC
* * *
39691 TTACATCTTTTGTGATTTTGGTTATCTTA
1 TTACATCTTTTGTAATTTTGATTATCATA
*
39720 TTACATTTTTTGTAATTTTGATTATCATA
1 TTACATCTTTTGTAATTTTGATTATCATA
39749 TT
1 TT
39751 TCTCCAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.22, C:0.08, G:0.10, T:0.60
Consensus pattern (29 bp):
TTACATCTTTTGTAATTTTGATTATCATA
Found at i:40638 original size:208 final size:205
Alignment explanation
Indices: 40282--40682 Score: 757
Period size: 208 Copynumber: 1.9 Consensus size: 205
40272 ATCAATGGTG
40282 AATGTTATTAATTTTTTAAGTCTAAGATTACTAACAAAGTTGTAGTGAATAAGATACAACACATT
1 AATGTTATTAATTTTTTAAGTCTAAGATTACTAACAAAGTTGTAGTGAATAAGATACAACACATT
*
40347 ATTATTATATATAAAACTATACCAAAAAAAAGTAGTTGAACATTAGTGGTTGATTTATTAAATTA
66 ACTATTATATATAAAACTATACCAAAAAAAAGTAGTTGAACATTAGTGGTTGATTTATTAAATTA
40412 AATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAAGATCCGATTTATTTATC
131 AATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATT-AAGATCCGATTTATTTATC
40477 AATGGTGAATT
195 AATGGTGAATT
40488 AATGTTATTAATTTTTTAAGTCTAAGATTACTAACAAAGTTGTAGTGAATAAGATACAACACATT
1 AATGTTATTAATTTTTTAAGTCTAAGATTACTAACAAAGTTGTAGTGAATAAGATACAACACATT
*
40553 ACTATTATATATATAGAACTATACCAAAAAAAATTAGTTGAACATTAGTGGTTGATTTATTAAAT
66 ACTATTATATATA-A-AACTATACCAAAAAAAAGTAGTTGAACATTAGTGGTTGATTTATTAAAT
40618 TAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAGATCCGATTTATTTAT
129 TAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAGATCCGATTTATTTAT
40683 TATTAAGGAA
Statistics
Matches: 191, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
206 77 0.40
207 19 0.10
208 95 0.50
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (205 bp):
AATGTTATTAATTTTTTAAGTCTAAGATTACTAACAAAGTTGTAGTGAATAAGATACAACACATT
ACTATTATATATAAAACTATACCAAAAAAAAGTAGTTGAACATTAGTGGTTGATTTATTAAATTA
AATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAGATCCGATTTATTTATCA
ATGGTGAATT
Found at i:40826 original size:17 final size:17
Alignment explanation
Indices: 40806--40867 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
40796 AATTAATGTA
40806 AGTATTTCAGTTATTAT
1 AGTATTTCAGTTATTAT
* *
40823 AGTATTACATTTAATTAATGT
1 AGTATTTCAGTT-ATT-A--T
40844 AAGTATTTCAGTTATTAT
1 -AGTATTTCAGTTATTAT
40862 AGTATT
1 AGTATT
40868 ACATTTAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
17 16 0.44
18 4 0.11
19 1 0.03
20 1 0.03
21 4 0.11
22 10 0.28
ACGTcount: A:0.34, C:0.05, G:0.11, T:0.50
Consensus pattern (17 bp):
AGTATTTCAGTTATTAT
Found at i:40834 original size:22 final size:22
Alignment explanation
Indices: 40809--40873 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
40799 TAATGTAAGT
40809 ATTTCAGTTATTATAGTATTAC
1 ATTTCAGTTATTATAGTATTAC
* *
40831 ATTT-AATTA--AT-GTA--AGT
1 ATTTCAGTTATTATAGTATTA-C
40848 ATTTCAGTTATTATAGTATTAC
1 ATTTCAGTTATTATAGTATTAC
40870 ATTT
1 ATTT
40874 AATTAATGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
16 1 0.03
17 4 0.12
18 7 0.22
19 2 0.06
20 2 0.06
21 7 0.22
22 8 0.25
23 1 0.03
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (22 bp):
ATTTCAGTTATTATAGTATTAC
Found at i:40846 original size:39 final size:39
Alignment explanation
Indices: 40792--40911 Score: 213
Period size: 39 Copynumber: 3.1 Consensus size: 39
40782 ATTTTTAAGA
40792 ATTTAATTAATGTAAGTATTTCAGTTATTATAGTATTAC
1 ATTTAATTAATGTAAGTATTTCAGTTATTATAGTATTAC
40831 ATTTAATTAATGTAAGTATTTCAGTTATTATAGTATTAC
1 ATTTAATTAATGTAAGTATTTCAGTTATTATAGTATTAC
* *
40870 ATTTAATTAATGTAAGTATTTTAGTTATTATATATATTAC
1 ATTTAATTAATGTAAGTATTTCAGTTATTATA-GTATTAC
40910 AT
1 AT
40912 AGGAATTAAA
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
39 70 0.90
40 8 0.10
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (39 bp):
ATTTAATTAATGTAAGTATTTCAGTTATTATAGTATTAC
Found at i:41447 original size:7 final size:7
Alignment explanation
Indices: 41435--41463 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
41425 GTAAAACTGC
41435 TACAAAG
1 TACAAAG
41442 TACAAAG
1 TACAAAG
41449 TACAAAG
1 TACAAAG
41456 TACAAAG
1 TACAAAG
41463 T
1 T
41464 CAGTAAAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.55, C:0.14, G:0.14, T:0.17
Consensus pattern (7 bp):
TACAAAG
Found at i:44272 original size:20 final size:19
Alignment explanation
Indices: 44231--44273 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
44221 TTCATCTTAA
*
44231 TTTTCCCTTTCTTTTCTGG
1 TTTTCCCTTTCTATTCTGG
44250 TTTTCCGCTTTGCTATTCT-G
1 TTTTCC-CTTT-CTATTCTGG
44270 TTTT
1 TTTT
44274 AGATGTTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 6 0.29
20 9 0.43
21 6 0.29
ACGTcount: A:0.02, C:0.23, G:0.12, T:0.63
Consensus pattern (19 bp):
TTTTCCCTTTCTATTCTGG
Found at i:52090 original size:57 final size:58
Alignment explanation
Indices: 51974--52091 Score: 202
Period size: 57 Copynumber: 2.0 Consensus size: 58
51964 AGCATAAATG
* *
51974 AATCGATACTATTATATGGTCAAGGCTTTTTTTTTTTCCAAAAAGAAAAAAACAAGAAA
1 AATCAATACTATTATATAGTCAAGGC-TTTTTTTTTTCCAAAAAGAAAAAAACAAGAAA
52033 AATCAATACTATTATATAGTCAAGGC-TTTTTTTTTCCAAAAAGAAAAAAACAAGAAA
1 AATCAATACTATTATATAGTCAAGGCTTTTTTTTTTCCAAAAAGAAAAAAACAAGAAA
52090 AA
1 AA
52092 GAAGAAGACG
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
57 33 0.58
59 24 0.42
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (58 bp):
AATCAATACTATTATATAGTCAAGGCTTTTTTTTTTCCAAAAAGAAAAAAACAAGAAA
Found at i:60604 original size:273 final size:273
Alignment explanation
Indices: 60117--60667 Score: 1084
Period size: 273 Copynumber: 2.0 Consensus size: 273
60107 AAATTCTTTC
60117 TGAAGAAGCAAAGCTCAAAGCAAAAGCACTTGAGCTAAGTAAGAAAGAAATTGAACTCCAAGATC
1 TGAAGAAGCAAAGCTCAAAGCAAAAGCACTTGAGCTAAGTAAGAAAGAAATTGAACTCCAAGATC
60182 GAAGGCAAGCCTTGATTGACATAGTCTATGGCAACGAAGATTATTCTTGCCAAGAACTAGCAAGC
66 GAAGGCAAGCCTTGATTGACATAGTCTATGGCAACGAAGATTATTCTTGCCAAGAACTAGCAAGC
*
60247 AAAGGTGCCATCAATGAGGAGGCAGTCCTTGCATATAGAAGATTGGCTATGAGAGCATTAACCAT
131 AAAGGCGCCATCAATGAGGAGGCAGTCCTTGCATATAGAAGATTGGCTATGAGAGCATTAACCAT
60312 AGGAGATGAAGATGGAGGAGATGATGATTTCGAGATCCGTAGTATTGATGACGATTCATACTACC
196 AGGAGATGAAGATGGAGGAGATGATGATTTCGAGATCCGTAGTATTGATGACGATTCATACTACC
60377 AAAAGTTTCCCTA
261 AAAAGTTTCCCTA
60390 TGAAGAAGCAAAGCTCAAAGCAAAAGCACTTGAGCTAAGTAAGAAAGAAATTGAACTCCAAGATC
1 TGAAGAAGCAAAGCTCAAAGCAAAAGCACTTGAGCTAAGTAAGAAAGAAATTGAACTCCAAGATC
60455 GAAGGCAAGCCTTGATTGACATAGTCTATGGCAACGAAGATTATTCTTGCCAAGAACTAGCAAGC
66 GAAGGCAAGCCTTGATTGACATAGTCTATGGCAACGAAGATTATTCTTGCCAAGAACTAGCAAGC
60520 AAAGGCGCCATCAATGAGGAGGCAGTCCTTGCATATAGAAGATTGGCTATGAGAGCATTAACCAT
131 AAAGGCGCCATCAATGAGGAGGCAGTCCTTGCATATAGAAGATTGGCTATGAGAGCATTAACCAT
*
60585 AGGAGATGAAGATGGAGGAGTTGATGATTTCGAGATCCGTAGTATTGATGACGATTCATACTACC
196 AGGAGATGAAGATGGAGGAGATGATGATTTCGAGATCCGTAGTATTGATGACGATTCATACTACC
60650 AAAAGTTTCCCTA
261 AAAAGTTTCCCTA
60663 TGAAG
1 TGAAG
60668 TTTTGTCTAG
Statistics
Matches: 276, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
273 276 1.00
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (273 bp):
TGAAGAAGCAAAGCTCAAAGCAAAAGCACTTGAGCTAAGTAAGAAAGAAATTGAACTCCAAGATC
GAAGGCAAGCCTTGATTGACATAGTCTATGGCAACGAAGATTATTCTTGCCAAGAACTAGCAAGC
AAAGGCGCCATCAATGAGGAGGCAGTCCTTGCATATAGAAGATTGGCTATGAGAGCATTAACCAT
AGGAGATGAAGATGGAGGAGATGATGATTTCGAGATCCGTAGTATTGATGACGATTCATACTACC
AAAAGTTTCCCTA
Found at i:68937 original size:23 final size:23
Alignment explanation
Indices: 68887--68986 Score: 73
Period size: 22 Copynumber: 4.3 Consensus size: 23
68877 ACCAAAAAGA
*
68887 TTTT-TTTATATAGCTATTTATC
1 TTTTATTTATTTAGCTATTTATC
*
68909 TATTATTTATTTA-CTATTTATC
1 TTTTATTTATTTAGCTATTTATC
68931 TTTTTATTTATTAATTTAGCTA-TTATC
1 -TTTTA--T-TT-ATTTAGCTATTTATC
** *
68958 TTTT-TTTACCTACCTATTTATC
1 TTTTATTTATTTAGCTATTTATC
68980 TATTTAT
1 T-TTTAT
68987 CTCTATACCT
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
21 6 0.10
22 20 0.32
23 15 0.24
24 1 0.02
25 1 0.02
26 6 0.10
27 10 0.16
28 3 0.05
ACGTcount: A:0.24, C:0.11, G:0.02, T:0.63
Consensus pattern (23 bp):
TTTTATTTATTTAGCTATTTATC
Found at i:68941 original size:27 final size:27
Alignment explanation
Indices: 68911--68962 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
68901 TATTTATCTA
*
68911 TTATTTATTTA-CTATTTATCTTTTTAT
1 TTATTAATTTAGCTA-TTATCTTTTTAT
68938 TTATTAATTTAGCTATTATCTTTTT
1 TTATTAATTTAGCTATTATCTTTTT
68963 TTACCTACCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.67
Consensus pattern (27 bp):
TTATTAATTTAGCTATTATCTTTTTAT
Found at i:68984 original size:8 final size:8
Alignment explanation
Indices: 68971--69072 Score: 62
Period size: 8 Copynumber: 12.6 Consensus size: 8
68961 TTTTACCTAC
68971 CTATTTAT
1 CTATTTAT
68979 CTATTTAT
1 CTATTTAT
* * *
68987 CTCTATAC
1 CTATTTAT
*
68995 CTCTTTAT
1 CTATTTAT
*
69003 CTAATTAT
1 CTATTTAT
* * *
69011 CAATATAC
1 CTATTTAT
69019 CTATTTAT
1 CTATTTAT
*
69027 CTATTATTT
1 CTATT-TAT
* *
69036 TTATTTGT
1 CTATTTAT
*
69044 -TTTTCTAT
1 CTATT-TAT
69052 CTATTTAT
1 CTATTTAT
*
69060 TTATTTAT
1 CTATTTAT
69068 CTATT
1 CTATT
69073 ATTTTTTTTA
Statistics
Matches: 69, Mismatches: 22, Indels: 6
0.71 0.23 0.06
Matches are distributed among these distances:
7 3 0.04
8 57 0.83
9 9 0.13
ACGTcount: A:0.25, C:0.15, G:0.01, T:0.60
Consensus pattern (8 bp):
CTATTTAT
Found at i:69001 original size:24 final size:24
Alignment explanation
Indices: 68968--69031 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
68958 TTTTTTTACC
**
68968 TACCTATTTATCTATTTATCTCTA
1 TACCTATTTATCTATTTATCAATA
* *
68992 TACCTCTTTATCTAATTATCAATA
1 TACCTATTTATCTATTTATCAATA
69016 TACCTATTTATCTATT
1 TACCTATTTATCTATT
69032 ATTTTTATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.28, C:0.20, G:0.00, T:0.52
Consensus pattern (24 bp):
TACCTATTTATCTATTTATCAATA
Found at i:69082 original size:20 final size:20
Alignment explanation
Indices: 69020--69085 Score: 80
Period size: 20 Copynumber: 3.2 Consensus size: 20
69010 TCAATATACC
69020 TATTTATCTATTATTTTTATT
1 TATTTATCTATTATTTTT-TT
* * *
69041 TGTTTTTCTATCTA-TTTATT
1 TATTTATCTAT-TATTTTTTT
69061 TATTTATCTATTATTTTTTT
1 TATTTATCTATTATTTTTTT
69081 TATTT
1 TATTT
69086 TAATATAATT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
19 2 0.05
20 21 0.57
21 12 0.32
22 2 0.05
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.73
Consensus pattern (20 bp):
TATTTATCTATTATTTTTTT
Found at i:69083 original size:16 final size:16
Alignment explanation
Indices: 69037--69080 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
69027 CTATTATTTT
* *
69037 TATTTGTTTTTCTATC
1 TATTTATTTTTTTATC
*
69053 TATTTATTTATTTATC
1 TATTTATTTTTTTATC
69069 TA-TTATTTTTTT
1 TATTTATTTTTTT
69081 TATTTTAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 9 0.38
16 15 0.62
ACGTcount: A:0.18, C:0.07, G:0.02, T:0.73
Consensus pattern (16 bp):
TATTTATTTTTTTATC
Found at i:71580 original size:13 final size:13
Alignment explanation
Indices: 71562--71587 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
71552 CTTGGCATGA
71562 GTGATGATTTTTG
1 GTGATGATTTTTG
71575 GTGATGATTTTTG
1 GTGATGATTTTTG
71588 TTGTTACCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (13 bp):
GTGATGATTTTTG
Found at i:77092 original size:14 final size:14
Alignment explanation
Indices: 77073--77110 Score: 76
Period size: 14 Copynumber: 2.7 Consensus size: 14
77063 GATCAACCAA
77073 ATCTGATTCTGTTT
1 ATCTGATTCTGTTT
77087 ATCTGATTCTGTTT
1 ATCTGATTCTGTTT
77101 ATCTGATTCT
1 ATCTGATTCT
77111 TTTGCAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.16, C:0.16, G:0.13, T:0.55
Consensus pattern (14 bp):
ATCTGATTCTGTTT
Found at i:79369 original size:224 final size:224
Alignment explanation
Indices: 78979--79427 Score: 709
Period size: 224 Copynumber: 2.0 Consensus size: 224
78969 ATATAATATA
*
78979 CTACATATTATTTTTGTAAAAAGGTGAAATTACTAAATACTCCTTCTAACTTTTAACTTGGGATA
1 CTACATATTATTTTTGTAAAAAGGTGAAATTACTAAATACTCCTTCTAACTTTTAACCTGGGATA
* ** * *
79044 ATCTTATCGTCCCGTTTTAGTCATTTCTCACATATGATTACACTGGACCGATTCGTATTCCATCA
66 ACCTTATCACCCCGTTTTAGTCATTTCTCACATACGATTACACTGAACCGATTCGTATTCCATCA
** *
79109 CTCTATAACCTCATAAATCACATTTACTATATTTAAACCCACAGAAAACGTGTTCACTTTTACAG
131 CTCTATAACCTCATAAATCACATTTACTATATTTAAACCCACAGAAAACACGTTCACATTTACAG
*
79174 AGCAAAACCACAATCTATAAAAATTGACT
196 AGCAAAACAACAATCTATAAAAATTGACT
** * * *
79203 CTACATATTATTTTTGTAACCAGGTGAAATTACTAAATGCTCCTTCTAACTTTTAACCTGGGGTG
1 CTACATATTATTTTTGTAAAAAGGTGAAATTACTAAATACTCCTTCTAACTTTTAACCTGGGATA
* * *
79268 ACCTTATCACCCCGTTTTAGTCATTTCTCACATGCGGTTGCACTGAACCGATTCGTATTCCATCA
66 ACCTTATCACCCCGTTTTAGTCATTTCTCACATACGATTACACTGAACCGATTCGTATTCCATCA
* * *
79333 CTCTATAACCTCATAAATCATATTTATTATATTTAAATCCACAGAAAACACGTTCACATTTACAG
131 CTCTATAACCTCATAAATCACATTTACTATATTTAAACCCACAGAAAACACGTTCACATTTACAG
79398 AGCAAAACAACAATCTATAAAAATTGACT
196 AGCAAAACAACAATCTATAAAAATTGACT
79427 C
1 C
79428 ATATGATAAT
Statistics
Matches: 204, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
224 204 1.00
ACGTcount: A:0.34, C:0.22, G:0.10, T:0.34
Consensus pattern (224 bp):
CTACATATTATTTTTGTAAAAAGGTGAAATTACTAAATACTCCTTCTAACTTTTAACCTGGGATA
ACCTTATCACCCCGTTTTAGTCATTTCTCACATACGATTACACTGAACCGATTCGTATTCCATCA
CTCTATAACCTCATAAATCACATTTACTATATTTAAACCCACAGAAAACACGTTCACATTTACAG
AGCAAAACAACAATCTATAAAAATTGACT
Found at i:83058 original size:19 final size:19
Alignment explanation
Indices: 83034--83079 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
83024 CGGACCGGGT
*
83034 CAAACCGGTTCGGTCCGAC
1 CAAACCGGTTCGGACCGAC
* *
83053 CAAACCAGTTCGGACCGGC
1 CAAACCGGTTCGGACCGAC
*
83072 CAAGCCGG
1 CAAACCGG
83080 CTGGCCCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.24, C:0.37, G:0.28, T:0.11
Consensus pattern (19 bp):
CAAACCGGTTCGGACCGAC
Done.