genome.fa.s15672.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015672.1 Corchorus olitorius cultivar O-4 contig15705, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  179081

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
780--883	52	2.0	51	92	1	172	50	20	3	25	1.64
3220--3244	13	1.9	13	100	0	50	56	8	4	32	1.47
4620--4676	22	2.5	22	80	8	60	56	0	12	31	1.36
4595--4848	132	1.9	132	88	4	379	50	1	11	36	1.49
5360--5599	134	1.8	130	85	7	340	36	9	2	51	1.48
7133--7174	22	1.9	22	90	0	66	30	4	9	54	1.53
7859--7923	22	3.0	22	83	0	76	40	10	15	33	1.82
7972--8284	22	14.6	22	69	12	168	37	8	17	36	1.81
7858--8133	44	6.3	44	73	12	194	38	9	16	35	1.81
7972--8132	87	1.9	88	86	2	236	36	9	18	34	1.84
8611--8667	22	2.6	23	83	13	75	38	7	10	43	1.66
8611--8723	44	2.6	43	78	9	104	40	12	10	36	1.78
9385--9506	61	2.0	61	98	0	235	36	17	11	35	1.86
9710--9767	22	2.6	21	84	10	71	41	12	12	34	1.79
9734--9807	22	3.3	21	75	17	60	36	14	8	40	1.76
9856--9911	21	2.6	21	91	2	76	32	17	12	37	1.88
9856--9984	22	6.0	22	75	7	120	37	18	7	35	1.80
9877--9993	43	2.7	43	81	7	123	41	17	5	35	1.75
12252--12319	22	3.0	22	76	20	70	61	1	1	35	1.14
16553--16588	16	2.3	15	95	4	63	52	5	0	41	1.24
16559--16596	9	4.4	9	83	9	53	52	7	0	39	1.31
16570--17331	379	2.0	380	97	0	1445	33	13	14	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18129--18213	29	2.9	29	92	0	143	24	12	10	51	1.71
20272--20345	30	2.5	30	86	2	105	18	28	17	35	1.94
20272--20346	29	2.6	28	83	8	96	18	28	17	36	1.94
20543--20575	17	1.9	17	93	0	57	30	18	33	18	1.94
25843--25898	23	2.4	23	96	0	103	42	19	7	30	1.78
26549--26703	84	1.9	82	89	2	238	34	18	16	30	1.93
38063--38099	19	1.9	19	88	0	56	29	10	16	43	1.82
47498--47522	5	5.0	5	100	0	50	0	20	0	80	0.72
61839--61968	41	2.8	49	80	17	195	34	21	6	36	1.80
62027--62062	18	2.0	18	100	0	72	33	33	22	11	1.89
65455--65488	17	1.9	17	88	5	50	17	2	5	73	1.16
78472--78496	1	25.0	1	100	0	50	0	0	0	100	0.00
78743--78779	19	1.9	19	88	0	56	29	16	13	40	1.86
78755--78812	28	2.1	28	96	0	107	27	20	15	36	1.93
81186--81211	2	13.0	2	100	0	52	50	0	0	50	1.00
82629--82663	16	2.2	16	89	0	52	37	40	17	5	1.73
83478--83608	62	2.2	60	88	5	192	48	0	19	32	1.49
84631--84929	123	2.4	120	71	13	275	50	3	9	37	1.50
86039--86099	21	2.7	23	87	12	90	31	11	21	36	1.89
87398--87441	18	2.6	16	80	13	52	43	4	6	45	1.51
87594--87642	25	2.0	25	88	4	73	44	26	4	24	1.71
99274--99307	14	2.3	15	90	5	52	44	5	11	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116231--116371	66	2.1	65	87	7	196	26	9	21	43	1.82
117494--117535	2	21.0	2	100	0	84	0	50	0	50	1.00
122122--122240	54	2.4	46	81	14	139	28	9	20	42	1.83
122497--122536	19	2.2	18	86	4	53	70	10	20	0	1.16
128489--128566	30	2.6	30	89	2	111	19	12	8	58	1.60
129235--129367	44	3.0	44	97	0	248	25	16	26	31	1.96
132080--132244	90	1.8	90	100	0	330	29	12	18	40	1.87
134927--135005	39	2.0	39	100	0	158	20	7	22	49	1.74
137198--137274	38	2.0	38	87	9	113	18	14	24	42	1.87
139234--139363	64	2.0	64	90	0	206	26	18	25	29	1.98
146696--148165	748	2.0	752	97	1	2761	25	15	20	38	1.92
162314--162397	40	2.1	40	91	4	134	52	9	10	27	1.67
168086--168120	18	1.9	18	94	0	61	51	11	8	28	1.67
168240--168279	18	2.3	18	83	16	57	47	0	0	52	1.00
168244--168278	17	2.1	17	89	10	54	45	0	0	54	0.99
168320--168394	35	2.1	35	100	0	150	41	20	17	21	1.90
177390--177427	10	3.9	10	83	16	53	31	15	0	52	1.43
177739--177860	22	5.6	22	74	8	106	31	8	17	42	1.78
177872--178034	44	3.7	44	77	4	150	38	11	17	33	1.85
177872--178063	22	8.8	22	72	7	122	38	10	17	33	1.84
177914--178063	44	3.4	43	76	10	142	39	10	15	34	1.82
178139--178193	22	2.4	23	78	3	67	40	9	20	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178165--178281	61	1.9	60	86	5	164	34	5	21	39	1.75
178268--178366	22	4.5	22	76	2	92	40	7	16	36	1.75
178268--178383	44	2.6	42	74	11	108	38	6	16	37	1.75
178398--178451	21	2.6	21	96	0	99	29	5	20	44	1.74
178477--178612	22	6.4	21	76	16	86	41	5	20	33	1.74
178467--178578	43	2.6	44	79	12	110	42	6	16	34	1.73
178511--178670	22	7.5	21	69	21	93	40	7	15	36	1.76
178462--178634	22	8.0	23	74	14	68	40	5	19	34	1.75
178462--178669	107	2.0	105	83	9	262	39	7	16	36	1.77
178745--178800	22	2.5	22	82	0	67	37	5	12	44	1.65
178890--178956	22	3.1	21	78	16	75	40	5	10	43	1.63
179022--179048	2	13.5	2	100	0	54	48	0	0	51	1.00

Tables:   1

The End!