Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015673.1 Corchorus olitorius cultivar O-4 contig15706, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7498
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:6996 original size:24 final size:22

Alignment explanation


    Indices: 6941--6997  Score: 64
    Period size: 20  Copynumber: 2.6  Consensus size: 22

       6931 AAAAATTGTT

                              **  
       6941 TATCATTAGTTTGAATCTGTAC
          1 TATCATTAGTTTGAATCTAAAC

                                   
       6963 -A-CATTAGTTTGAATCCTAAAC
          1 TATCATTAGTTTGAAT-CTAAAC

                          
       6984 ATATCATTAGTTTG
          1 -TATCATTAGTTTG

       6998 TGTATAAGGC


Statistics
Matches: 29,  Mismatches: 2, Indels: 6
        0.78            0.05        0.16

Matches are distributed among these distances:
  20   13  0.45
  21    5  0.17
  23    1  0.03
  24   10  0.34

ACGTcount: A:0.32, C:0.14, G:0.12, T:0.42


Consensus pattern (22 bp):   
TATCATTAGTTTGAATCTAAAC
Done.