Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015674.1 Corchorus olitorius cultivar O-4 contig15707, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32558

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
904--935
16
2.0
16
100
0
64
62
6
12
18
1.50
3287--3322
6
6.0
6
93
0
63
66
2
16
13
1.36
3320--3360
2
20.0
2
85
5
55
43
4
0
51
1.23
3416--3476
27
2.3
27
83
16
74
44
8
1
45
1.43
6150--6232
42
1.9
43
83
9
107
51
9
13
25
1.70
6168--6232
21
3.0
22
76
19
73
49
10
15
24
1.76
6175--6318
21
6.6
22
76
12
120
40
10
13
34
1.79
6175--6318
44
3.3
44
79
7
145
40
10
13
34
1.79
6175--6324
22
6.9
21
74
15
101
40
10
14
35
1.79
9346--9415
36
1.9
36
91
0
113
21
10
8
60
1.55
9927--10346
207
2.0
203
94
5
725
44
8
10
36
1.71
10891--10965
37
2.0
37
100
0
150
36
21
13
29
1.91
15837--15917
40
2.0
40
100
0
162
18
22
14
44
1.86
20533--20613
22
3.7
22
88
1
119
38
9
11
40
1.74
20533--20627
43
2.2
43
83
9
113
38
11
10
38
1.76
20533--20627
22
4.4
21
85
7
93
38
11
10
38
1.76
20470--20769
156
1.9
156
90
2
478
35
12
12
40
1.80
20689--20850
43
3.7
42
78
16
136
37
13
9
40
1.77
20818--20876
22
2.8
22
74
5
59
27
16
10
45
1.80
20689--20864
22
8.1
21
76
11
142
35
14
9
40
1.78
23774--23862
45
2.0
45
97
0
169
31
12
13
42
1.81
26108--26178
29
2.4
29
74
6
72
16
22
30
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26157--26223
30
2.3
31
79
10
86
16
22
28
32
1.95

Tables:   1

The End!