Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015679.1 Corchorus olitorius cultivar O-4 contig15712, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22001

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--53
2
27.0
2
79
11
56
47
5
0
47
1.26
9--60
26
2.1
24
92
7
86
46
11
0
42
1.40
594--643
20
2.4
21
81
18
61
38
18
22
22
1.94
6199--6227
11
2.7
11
94
5
51
44
6
10
37
1.65
6226--6337
41
2.7
41
88
0
170
30
15
16
37
1.90
6431--6461
16
1.9
16
100
0
62
19
22
12
45
1.84
8342--8378
19
2.0
19
89
5
58
64
0
0
35
0.94
8575--8629
23
2.4
23
100
0
110
50
3
27
18
1.63
10541--10713
94
1.8
95
92
2
294
51
1
12
34
1.50
10661--10819
81
2.0
78
95
3
282
50
5
8
35
1.55
10828--10889
31
2.0
31
93
0
106
43
6
19
30
1.76
12512--12552
21
2.0
21
85
4
57
19
9
4
65
1.40
13596--13666
20
3.7
20
77
7
83
45
2
0
52
1.15
13607--13652
23
2.0
24
91
4
76
52
2
0
45
1.13
17638--17720
22
3.8
21
74
13
60
31
13
15
39
1.86
17654--17720
22
3.0
22
78
8
73
29
13
17
38
1.88
17768--18006
22
10.8
22
73
13
168
38
9
17
34
1.82
17801--18035
22
10.8
22
70
17
100
37
9
18
34
1.84
18238--18336
22
4.5
22
75
5
85
40
7
15
37
1.74

Tables:   1

The End!