Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001568.1 Corchorus olitorius cultivar O-4 contig01568, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1013
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38


Found at i:333 original size:12 final size:13

Alignment explanation


    Indices: 316--345  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

        306 GTTTACTTTA

                         
        316 ATTTTCTTGATT-
          1 ATTTTCTTGATTG

                         
        328 ATTTTCTTGATTG
          1 ATTTTCTTGATTG

                 
        341 ATTTT
          1 ATTTT

        346 AATTGCTAGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.71
  13    5  0.29

ACGTcount: A:0.17, C:0.07, G:0.10, T:0.67


Consensus pattern (13 bp):   
ATTTTCTTGATTG
Done.