genome.fa.s15683.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015683.1 Corchorus olitorius cultivar O-4 contig15716, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112866

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183--225	11	3.7	11	78	9	50	41	0	0	58	0.98
174--224	22	2.2	24	83	16	72	39	0	0	60	0.97
531--576	23	2.0	23	95	0	83	19	30	15	34	1.93
5972--6046	37	2.0	37	89	0	114	33	21	24	21	1.97
6131--6323	106	1.8	108	89	2	309	33	11	17	37	1.87
8023--8059	16	2.2	17	90	4	58	83	0	13	2	0.74
26854--26898	3	15.0	3	90	0	72	0	0	71	28	0.87
28103--28132	15	1.9	16	93	6	53	43	0	3	53	1.17
28487--30953	336	7.5	332	77	9	1748	34	13	14	36	1.86
37383--37409	2	13.5	2	100	0	54	51	0	0	48	1.00
52132--52158	12	2.2	12	100	0	54	7	0	7	85	0.75
53091--53250	80	2.0	80	91	0	257	34	23	8	33	1.85
53935--53966	12	2.7	12	95	0	55	3	6	68	21	1.26
57344--57426	6	13.8	6	88	0	112	0	25	67	7	1.16
57350--57428	9	8.8	9	94	0	113	0	25	67	7	1.17
58324--58385	8	8.3	7	82	10	70	79	16	3	1	0.95
58323--58374	15	3.4	15	89	2	77	80	15	3	0	0.85
58332--58385	23	2.3	23	84	9	74	79	14	3	1	0.95
58324--58381	15	3.9	14	84	10	71	79	15	3	1	0.95
63339--63395	16	3.9	16	69	21	52	77	14	7	1	1.06
63355--63403	19	2.5	19	78	18	55	79	14	6	0	0.91
63349--63410	27	2.3	27	97	2	117	77	14	8	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66568--66644	39	2.0	39	85	10	104	22	28	3	45	1.70
67708--68386	177	3.8	177	87	2	979	35	18	14	31	1.91
68708--69111	177	2.3	178	85	2	549	37	18	11	32	1.87
68831--69389	279	2.0	280	91	0	913	36	18	10	34	1.86
69109--69626	177	2.9	176	87	2	734	36	18	12	32	1.89
69283--70567	626	2.1	615	87	2	1838	33	15	14	36	1.88
69907--70258	177	2.0	177	94	0	623	35	17	14	32	1.91
73838--73881	2	22.0	2	100	0	88	50	0	0	50	1.00
75229--75262	17	2.0	17	100	0	68	52	11	11	23	1.70
80481--80587	35	2.8	39	73	15	114	41	14	14	28	1.86
80447--80583	35	3.7	35	72	16	107	39	15	15	29	1.88
84377--85249	430	2.0	435	86	4	1226	35	20	15	28	1.93
87024--87905	439	2.0	438	85	2	1205	36	19	14	28	1.92
87515--89072	789	2.0	785	91	1	2555	31	18	17	32	1.94
92843--92967	50	2.5	50	97	0	232	40	7	21	31	1.80
94176--94246	37	1.9	37	97	0	133	29	21	8	40	1.82
95767--95841	31	2.4	31	90	0	123	36	20	16	28	1.93
95818--95893	29	2.5	30	79	12	84	34	9	21	35	1.85
100599--100635	19	1.9	19	94	0	65	16	35	13	35	1.88
100707--100743	19	1.9	19	88	0	56	32	16	13	37	1.87
106616--107053	233	1.9	232	89	2	682	26	17	17	38	1.92
108917--108970	26	2.1	26	93	6	92	33	7	24	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108917--108983	26	2.6	26	88	4	82	32	10	20	35	1.87

Tables:   1

The End!