Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015685.1 Corchorus olitorius cultivar O-4 contig15718, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74855

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
117--160
2
22.0
2
100
0
88
50
0
0
50
1.00
1473--1516
24
1.9
23
86
9
63
40
6
9
43
1.63
5120--5157
20
2.0
19
90
10
60
57
10
5
26
1.53
12030--12055
2
13.0
2
100
0
52
50
50
0
0
1.00
17551--17595
3
14.7
3
82
13
56
66
0
0
33
0.92
18576--18606
13
2.4
13
100
0
62
16
12
32
38
1.86
19123--19236
56
2.0
56
91
0
183
35
22
1
40
1.65
21241--21278
13
2.8
13
92
4
58
31
7
36
23
1.84
24790--24932
71
2.0
70
95
2
261
26
30
11
31
1.91
28019--28057
19
2.1
19
95
0
69
38
15
12
33
1.85
29006--29054
21
2.4
21
77
16
57
67
4
8
20
1.34
42064--42132
33
2.1
32
91
2
111
47
23
14
14
1.81
50075--50105
7
4.6
7
96
4
55
90
0
9
0
0.46
58907--58937
14
2.2
14
94
0
53
48
38
3
9
1.52
65512--65550
20
2.0
20
89
0
60
28
5
12
53
1.60
66389--66433
13
3.6
12
84
6
54
0
17
4
77
0.92

Tables:   1

The End!