Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015687.1 Corchorus olitorius cultivar O-4 contig15720, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93253

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1962--2023
28
2.1
29
85
8
81
38
8
3
50
1.48
2574--2626
26
2.0
26
96
0
97
41
3
13
41
1.62
2969--3000
16
2.0
16
100
0
64
12
18
12
56
1.67
3856--3979
61
2.0
60
95
4
223
18
10
19
51
1.74
14970--15014
23
2.0
23
95
0
81
20
17
15
46
1.84
20152--20189
20
1.9
20
88
0
58
44
10
10
34
1.73
47873--47909
19
2.0
19
94
5
67
67
0
0
32
0.91
49438--49502
33
2.0
33
93
0
112
20
21
10
47
1.80
53720--53786
30
2.3
30
82
5
84
17
22
26
32
1.96
55912--55937
7
3.7
7
100
0
52
0
0
11
88
0.52
56297--56558
132
2.0
131
90
1
407
50
2
8
37
1.47
65431--65455
13
1.9
13
100
0
50
40
8
12
40
1.72
65444--65484
18
2.2
18
86
8
55
46
7
4
41
1.53
65703--65778
36
2.1
37
97
2
145
48
10
11
28
1.73
65713--65780
21
3.5
20
70
24
65
51
8
13
26
1.70
66691--66792
40
2.6
38
80
9
98
43
13
10
32
1.79
66715--66855
22
6.7
21
71
21
100
42
12
11
34
1.78
66717--66792
40
1.9
40
89
5
118
46
13
7
32
1.72
66959--67020
22
2.8
22
83
9
65
24
25
9
40
1.85
66992--67041
26
1.9
26
91
0
82
26
32
8
34
1.85
67028--67151
22
5.6
22
72
11
83
37
12
11
39
1.78
67027--67157
68
1.9
67
82
1
163
36
12
11
38
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68104--68336
118
2.0
118
94
0
412
34
6
22
36
1.81
74823--75278
163
2.8
162
86
4
596
29
22
18
29
1.97
77008--77047
6
6.7
6
82
0
53
17
15
50
17
1.79
77427--77636
32
6.5
32
93
1
348
32
25
18
23
1.97
81066--85533
330
13.7
329
77
8
3515
37
15
13
33
1.87
81066--85533
331
13.6
330
74
10
3068
37
15
13
33
1.87
85890--85919
15
1.9
16
93
6
53
53
3
0
43
1.17
88038--88062
11
2.3
11
100
0
50
24
8
20
48
1.76
91231--91320
43
2.1
43
100
0
180
58
23
15
2
1.48

Tables:   1

The End!