Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015690.1 Corchorus olitorius cultivar O-4 contig15723, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2895
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32


Found at i:1497 original size:23 final size:23

Alignment explanation


    Indices: 1467--1513  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1457 ATATCTGATG

                                   
       1467 AGGTTTTCTCTGTCAATCAAGAA
          1 AGGTTTTCTCTGTCAATCAAGAA

                                   
       1490 AGGTTTTCTCTGTCAATCAAGAA
          1 AGGTTTTCTCTGTCAATCAAGAA

             
       1513 A
          1 A

       1514 TCATGGCCCG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Consensus pattern (23 bp):   
AGGTTTTCTCTGTCAATCAAGAA

Found at i:2521 original size:3 final size:3

Alignment explanation


    Indices: 2513--2568  Score: 112
    Period size: 3  Copynumber: 18.7  Consensus size: 3

       2503 TTTGGGTAAC

                                                                           
       2513 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

                      
       2561 ATA ATA AT
          1 ATA ATA AT

       2569 GTGAAGTATA


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   53  1.00

ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34


Consensus pattern (3 bp):   
ATA

Done.