Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015691.1 Corchorus olitorius cultivar O-4 contig15724, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3058
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.39


Found at i:1540 original size:21 final size:21

Alignment explanation


    Indices: 1499--1541  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1489 CTTGTAATCT

                            *    
       1499 AAAGTTACTAAAAAGTTTATA
          1 AAAGTTACTAAAAAGTCTATA

                   *              
       1520 AAAGTTATTAAAATAG-CTATA
          1 AAAGTTACTAAAA-AGTCTATA

             
       1541 A
          1 A

       1542 TGTTTTTCAC


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21   17  0.89
  22    2  0.11

ACGTcount: A:0.53, C:0.05, G:0.09, T:0.33


Consensus pattern (21 bp):   
AAAGTTACTAAAAAGTCTATA
Done.