Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015692.1 Corchorus olitorius cultivar O-4 contig15725, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37753

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
248--289
22
1.9
22
85
0
57
42
4
11
40
1.63
1675--1723
15
2.9
17
82
14
57
51
2
4
42
1.32
2006--2035
6
4.8
6
95
4
51
50
0
13
36
1.42
2006--2039
12
2.8
13
86
13
54
50
0
11
38
1.39
2176--2202
2
13.5
2
100
0
54
48
0
0
51
1.00
10876--10901
3
8.7
3
100
0
52
0
34
0
65
0.93
25376--25901
286
1.9
274
83
12
690
34
11
17
36
1.86
31673--31731
18
3.3
18
71
17
59
15
37
3
44
1.63
31617--31739
36
3.4
36
94
0
201
15
39
2
42
1.60
31727--31791
15
4.3
15
72
23
57
4
47
0
47
1.22
31724--31785
24
2.6
24
89
0
97
4
48
0
46
1.23
31724--31788
27
2.5
26
85
7
80
4
47
0
47
1.22
34904--34987
36
2.3
36
100
0
168
50
17
16
15
1.79
37279--37339
31
2.0
31
100
0
122
39
6
22
31
1.80
37367--37428
20
3.1
21
90
4
76
17
40
8
33
1.79

Tables:   1

The End!