genome.fa.s15694.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015694.1 Corchorus olitorius cultivar O-4 contig15727, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50478

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2874--3083	68	3.1	67	74	16	245	31	17	12	38	1.87
2896--3176	65	4.3	66	74	15	228	30	16	12	40	1.85
2855--3138	133	2.1	133	96	0	532	32	17	10	39	1.85
3106--3147	22	1.9	22	85	0	57	38	16	2	42	1.61
3321--3373	22	2.4	22	83	0	61	50	7	13	28	1.68
5793--5844	27	2.0	27	92	3	88	44	1	9	44	1.48
8194--8221	13	2.2	13	100	0	56	35	17	7	39	1.78
8207--8338	68	1.9	68	100	0	264	27	12	15	44	1.82
9910--9980	29	2.4	30	86	6	92	23	22	11	42	1.86
10862--10925	32	1.9	32	87	9	92	26	25	26	21	2.00
11002--11067	29	2.2	30	84	7	82	40	16	24	18	1.90
12513--12609	31	3.1	31	84	0	122	46	16	11	25	1.80
13140--13320	22	8.3	22	78	7	138	38	16	10	35	1.83
13147--13340	44	4.4	44	76	5	151	39	15	10	34	1.83
13284--13340	22	2.6	22	83	5	62	43	17	7	31	1.76
13383--13459	22	3.5	21	75	7	73	35	19	7	37	1.81
13404--13589	64	2.9	64	76	14	172	33	19	9	38	1.83
13464--13693	22	10.4	22	71	11	141	31	17	10	40	1.83
13485--13693	43	4.8	43	74	5	163	32	16	10	40	1.83
14787--14811	3	8.3	3	100	0	50	68	0	0	32	0.90
17502--17545	23	1.9	23	86	9	63	38	11	13	36	1.81
19803--19830	13	2.2	13	100	0	56	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22499--22547	25	2.0	25	100	0	98	12	32	20	34	1.90
22981--23087	45	2.4	44	82	4	126	28	21	17	32	1.96
23012--23136	44	2.8	43	82	4	151	28	18	17	36	1.94
23483--23515	15	2.2	15	89	10	50	12	0	0	87	0.53
23919--23944	13	2.0	13	100	0	52	30	23	30	15	1.95
24693--24763	18	4.1	18	73	23	80	42	4	9	43	1.57
25103--25270	77	2.2	76	83	3	203	49	0	13	36	1.46
25122--25270	77	1.9	77	88	0	226	50	0	14	34	1.48
25538--25565	7	4.0	7	100	0	56	28	42	14	14	1.84
27512--27567	27	2.1	27	89	0	85	46	3	35	14	1.62
31489--31537	24	2.0	24	84	7	64	34	10	8	46	1.67
46961--47178	109	2.0	109	94	0	382	44	13	10	31	1.78
49123--49196	35	2.2	33	83	7	94	39	8	6	45	1.60
49870--49954	23	3.6	24	73	16	88	12	36	36	14	1.84
49860--49963	47	2.2	47	100	0	208	12	40	35	11	1.79

Tables:   1

The End!