Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015704.1 Corchorus olitorius cultivar O-4 contig15737, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47890

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4855--4941
44
2.0
44
97
0
165
22
9
17
50
1.74
7694--8106
208
2.0
208
96
0
754
37
22
13
26
1.92
17754--17805
27
1.9
27
84
7
70
59
25
11
3
1.49
19604--19637
17
2.0
17
100
0
68
41
11
11
35
1.78
20095--20127
12
2.8
12
90
4
50
30
0
0
69
0.88
26962--27840
292
3.0
292
90
3
1356
24
15
16
43
1.86
30419--30482
31
2.1
31
100
0
128
35
12
3
48
1.57
32755--32807
20
2.7
20
100
0
106
49
20
16
13
1.79
33526--33563
15
2.5
15
87
8
51
47
15
21
15
1.82
39626--39659
17
1.9
18
88
5
52
47
0
5
47
1.26
42890--42951
26
2.7
21
73
21
70
45
19
3
32
1.66
43499--43525
11
2.5
11
100
0
54
22
0
0
77
0.76
45029--45062
14
2.4
14
81
18
52
29
5
2
61
1.34
47176--47291
49
2.4
47
83
9
144
26
16
4
52
1.62
47479--47728
43
5.9
43
84
6
330
40
25
11
22
1.87
47479--47726
84
2.9
84
92
0
415
41
25
11
22
1.87
47835--47887
2
26.5
2
92
7
90
47
1
0
50
1.12

Tables:   1

The End!