Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015706.1 Corchorus olitorius cultivar O-4 contig15739, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5246
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:507 original size:21 final size:22

Alignment explanation


    Indices: 460--504  Score: 60
    Period size: 20  Copynumber: 2.2  Consensus size: 22

        450 GGCCGGCCCG

                                  
        460 TTTTG-TAAGCGGGCCTTAAAA
          1 TTTTGTTAAGCGGGCCTTAAAA

                              *   
        481 TTTTGTTAA-CGGG-CTTCAAA
          1 TTTTGTTAAGCGGGCCTTAAAA

                
        501 TTTT
          1 TTTT

        505 TGTCCATGCC


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  20   10  0.45
  21    9  0.41
  22    3  0.14

ACGTcount: A:0.24, C:0.13, G:0.20, T:0.42


Consensus pattern (22 bp):   
TTTTGTTAAGCGGGCCTTAAAA
Done.