Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015708.1 Corchorus olitorius cultivar O-4 contig15741, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90442

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
231--313
30
3.0
27
84
10
121
50
3
3
42
1.37
5592--5624
12
2.5
14
85
14
52
0
12
36
51
1.39
6282--6416
31
4.4
31
84
0
162
19
23
23
33
1.97
9662--9706
23
2.0
22
91
4
72
40
15
15
28
1.88
18719--18743
3
8.3
3
100
0
50
68
0
32
0
0.90
43428--43469
19
2.3
18
84
8
57
35
2
0
61
1.09
44626--44660
18
1.9
18
100
0
70
28
5
20
45
1.73
44865--44951
44
2.0
44
95
0
156
50
31
2
16
1.57
48356--48539
91
2.0
91
94
0
323
30
8
17
42
1.79
70750--70793
12
3.7
12
84
0
61
56
0
43
0
0.99
70750--70792
3
14.3
3
80
0
50
58
0
41
0
0.98
72835--72861
13
2.1
13
100
0
54
33
22
22
22
1.97
73377--73402
2
13.0
2
100
0
52
50
0
0
50
1.00
81140--81175
18
2.0
18
94
0
63
25
22
27
25
2.00
88443--88481
2
19.0
2
94
5
69
48
2
0
48
1.15
88697--88780
42
2.0
40
93
4
141
51
8
3
36
1.50
88771--88817
25
1.9
24
91
4
76
29
4
8
57
1.48
88891--89298
204
2.0
203
95
1
728
36
10
8
45
1.69

Tables:   1

The End!