Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015710.1 Corchorus olitorius cultivar O-4 contig15743, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26636

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1663--1698
2
18.0
2
100
0
72
50
0
0
50
1.00
4657--4834
83
2.3
81
82
9
210
46
8
3
41
1.54
4664--4816
73
2.1
72
80
11
168
47
7
3
41
1.49
12837--12921
38
2.2
38
97
2
161
32
14
9
43
1.77
13290--13326
19
1.9
19
94
0
65
16
18
13
51
1.76
19304--19346
21
2.1
21
95
4
79
62
0
13
23
1.31
19749--19877
25
5.2
25
90
2
188
17
15
32
34
1.91
20445--20483
20
2.1
19
90
9
62
17
5
33
43
1.72
22185--22209
13
1.9
13
100
0
50
68
8
0
24
1.16
22479--22505
2
13.5
2
100
0
54
51
0
0
48
1.00
24395--24435
21
2.0
20
85
9
55
14
17
12
56
1.68

Tables:   1

The End!