Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015713.1 Corchorus olitorius cultivar O-4 contig15746, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16102

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
482--523
20
2.1
20
90
0
66
54
0
7
38
1.28
2313--2350
20
1.9
20
88
0
58
13
2
18
65
1.37
2310--2352
10
4.3
10
75
0
50
16
2
23
58
1.50
3356--3438
24
3.5
24
100
0
166
20
34
32
12
1.89
4333--4385
26
2.2
22
87
12
70
62
3
0
33
1.13
4315--4366
16
3.1
16
76
18
52
63
0
1
34
1.06
5659--5792
33
3.8
33
78
14
160
16
39
32
11
1.84
5643--5792
74
2.0
74
100
0
300
16
37
34
12
1.85
5731--5809
33
2.4
33
85
4
106
20
43
27
8
1.81
6053--6077
11
2.3
11
100
0
50
84
0
16
0
0.63
7590--7652
31
2.0
31
100
0
126
28
25
26
19
1.98
12896--12960
32
2.0
32
100
0
130
24
18
9
47
1.77
14142--14176
6
5.8
6
96
0
61
17
17
2
62
1.44
14189--14411
39
5.6
39
73
11
155
23
21
17
36
1.95
14981--15015
2
17.0
2
88
5
52
45
5
0
48
1.26
15231--15311
39
2.0
40
90
2
128
50
7
3
38
1.48
15241--15301
17
3.2
18
68
20
52
50
9
3
36
1.52
15302--15348
25
1.9
24
95
4
85
29
6
8
55
1.55

Tables:   1

The End!