Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001572.1 Corchorus olitorius cultivar O-4 contig01572, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16561
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32


Found at i:3521 original size:3 final size:3

Alignment explanation


    Indices: 3515--3564  Score: 91
    Period size: 3  Copynumber: 16.7  Consensus size: 3

       3505 TGATCTTCTT

                                  *                                        
       3515 CTA CTA CTA CTA CTA CTT CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA
          1 CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA CTA

              
       3563 CT
          1 CT

       3565 CTCTCTTAAA


Statistics
Matches: 45,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3   45  1.00

ACGTcount: A:0.30, C:0.34, G:0.00, T:0.36


Consensus pattern (3 bp):   
CTA

Found at i:6272 original size:15 final size:15

Alignment explanation


    Indices: 6249--6279  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       6239 TCTAGAGCTC

                           
       6249 ATCCCGCTGTTGTCA
          1 ATCCCGCTGTTGTCA

                *          
       6264 ATCCTGCTGTTGTCA
          1 ATCCCGCTGTTGTCA

             
       6279 A
          1 A

       6280 GAAGCAGCCT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.16, C:0.29, G:0.19, T:0.35


Consensus pattern (15 bp):   
ATCCCGCTGTTGTCA
Done.