Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015722.1 Corchorus olitorius cultivar O-4 contig15755, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36262

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2216--2404
38
5.0
38
93
1
299
29
15
23
31
1.96
4908--4967
32
2.0
30
83
9
77
20
8
15
56
1.64
5107--5305
99
1.9
99
85
7
265
33
11
2
52
1.51
14102--14254
76
2.0
76
100
0
306
26
13
19
40
1.89
18064--18114
24
2.2
24
89
3
77
78
5
5
9
1.08
18089--18145
28
2.0
28
86
6
80
68
7
17
7
1.35
19058--19098
17
2.5
17
84
4
57
9
9
2
78
1.06
19059--19098
16
2.4
17
87
8
55
7
10
2
80
1.00
19217--19295
29
2.6
30
74
9
81
31
24
16
27
1.96
21871--21902
2
16.0
2
100
0
64
50
0
0
50
1.00
28039--28123
36
2.4
36
86
5
113
34
16
30
18
1.93

Tables:   1

The End!