Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015725.1 Corchorus olitorius cultivar O-4 contig15758, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45594

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
534--678
76
1.9
76
81
2
175
17
28
28
25
1.97
5344--5371
6
4.7
6
100
0
56
85
0
0
14
0.59
11640--11691
19
2.8
19
72
13
54
50
0
1
48
1.12
13204--13270
21
3.2
21
64
16
57
50
14
5
28
1.66
13191--13271
42
1.9
42
97
0
153
46
16
7
29
1.73
13337--13447
57
2.0
56
94
1
195
38
1
23
36
1.66
21833--21868
18
1.9
19
88
5
56
19
19
2
58
1.52
22282--22336
26
2.1
26
100
0
110
38
7
14
40
1.74
23201--23239
14
2.9
13
80
3
51
53
2
2
41
1.28
23225--23478
122
2.0
127
89
6
392
50
1
10
38
1.46
23574--23607
6
5.8
6
86
6
52
35
11
0
52
1.38
25277--25315
20
2.0
20
85
10
53
28
5
2
64
1.28
25481--25708
22
10.3
21
71
10
143
36
8
18
35
1.82
25733--25860
22
5.8
21
74
12
105
32
7
19
40
1.78
25713--25872
44
3.6
44
73
9
146
35
7
18
39
1.79
25713--25874
66
2.5
65
77
8
157
35
7
17
38
1.78
25914--26020
22
4.8
22
77
13
103
38
11
13
37
1.80
26188--26323
22
6.2
22
73
8
107
39
9
14
36
1.79
26188--26311
44
2.8
44
81
4
144
40
9
13
36
1.78
26346--26452
23
4.7
23
77
15
73
35
9
16
38
1.81
26345--26659
22
14.2
21
69
12
116
33
9
18
37
1.84
26990--27019
15
1.9
16
93
6
53
66
6
13
13
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33533--33566
15
2.3
15
94
0
59
73
11
2
11
1.20
33575--33663
44
2.0
44
84
4
115
56
8
13
21
1.65
33881--33922
16
2.6
16
88
7
59
69
9
9
11
1.38
35304--35339
18
1.9
18
88
5
54
36
22
2
38
1.69
35971--36009
20
2.0
20
85
10
53
28
5
2
64
1.28
36186--36400
22
9.7
21
70
11
117
36
8
15
38
1.79
36418--36858
22
19.9
22
70
12
170
39
10
15
34
1.82
36958--37530
22
26.4
22
67
16
153
38
10
15
36
1.81
36953--37530
44
13.3
44
68
16
217
38
10
15
35
1.82
37413--37450
19
2.1
19
90
5
60
52
2
10
34
1.50
44957--45077
57
2.1
56
93
1
206
53
7
4
34
1.48
44956--45090
57
2.5
52
85
12
200
51
8
4
36
1.52

Tables:   1

The End!