Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015726.1 Corchorus olitorius cultivar O-4 contig15759, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8740
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:5105 original size:1 final size:1

Alignment explanation


    Indices: 5099--5126  Score: 56
    Period size: 1  Copynumber: 28.0  Consensus size: 1

       5089 TTAAATTGAT

                                        
       5099 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA

       5127 TCAGTGTAAC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   27  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.