Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015730.1 Corchorus olitorius cultivar O-4 contig15763, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33523

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9--284
105
2.6
105
96
1
502
40
9
10
40
1.71
10984--11052
34
2.1
34
97
2
131
53
11
14
20
1.71
11112--11177
24
2.8
24
77
11
64
63
1
15
19
1.38
12168--12217
26
2.0
25
84
4
64
42
0
2
56
1.11
12223--12252
7
4.4
7
91
8
53
46
0
0
53
1.00
12105--12257
9
17.3
9
67
22
67
44
1
3
50
1.26
15314--15388
28
2.7
28
77
10
73
33
20
8
38
1.81
20942--21437
247
2.0
247
94
0
866
39
18
14
27
1.90
21817--21855
19
2.1
19
95
0
69
35
30
0
33
1.58
22213--22245
17
1.9
17
93
0
57
39
9
0
51
1.34
26171--26225
19
2.9
19
76
10
58
61
3
1
32
1.24
28625--28738
56
2.0
56
96
0
210
40
1
23
34
1.65
31374--31513
70
2.0
71
85
2
194
31
5
20
42
1.74

Tables:   1

The End!