Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015731.1 Corchorus olitorius cultivar O-4 contig15764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6530
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32


Found at i:37 original size:2 final size:2

Alignment explanation


    Indices: 30--87  Score: 72
    Period size: 2  Copynumber: 31.5  Consensus size: 2

         20 GTCCTGGCTG

                                                 *                        
         30 TA TA TA TA TA TA TA T- TA T- TA T- TT TA TA TA TA TA -A TA T-
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                                           
         67 TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA T

         88 CCAATGAGAT


Statistics
Matches: 50,  Mismatches: 1, Indels: 10
        0.82            0.02        0.16

Matches are distributed among these distances:
   1    5  0.10
   2   45  0.90

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (2 bp):   
TA

Done.