Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015732.1 Corchorus olitorius cultivar O-4 contig15765, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44481

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10646--10732
24
4.0
24
67
22
73
48
20
4
26
1.69
10606--10734
40
3.2
40
86
3
172
44
20
6
28
1.75
16265--16298
12
2.8
12
86
0
50
79
5
8
5
1.05
18290--18389
27
3.9
25
81
11
105
37
15
7
41
1.74
18601--18674
30
2.5
31
82
13
100
32
28
9
29
1.88
18598--18674
29
2.5
31
82
14
106
31
27
11
29
1.92
18972--19042
29
2.4
30
83
7
90
33
8
26
30
1.86
22096--22164
2
35.5
2
77
11
63
46
2
0
50
1.16
22097--22164
20
3.3
22
77
8
72
45
2
0
51
1.16
22094--22185
16
5.3
18
73
13
68
48
2
0
48
1.13
26228--26277
19
2.6
19
80
0
64
28
14
12
46
1.79
26566--26593
14
2.0
14
100
0
56
14
7
35
42
1.73
37097--37129
16
2.1
16
100
0
66
39
18
6
36
1.75
42425--42491
2
36.5
2
77
16
74
52
1
1
44
1.19
42433--42491
25
2.4
24
91
5
100
54
1
0
44
1.10
43147--43190
20
2.2
20
83
0
52
45
0
15
38
1.47
43321--43399
31
2.6
31
97
2
151
43
16
11
29
1.83
44443--44480
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!