Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015735.1 Corchorus olitorius cultivar O-4 contig15768, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8033
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:1250 original size:32 final size:32

Alignment explanation


    Indices: 1191--1251  Score: 86
    Period size: 32  Copynumber: 1.9  Consensus size: 32

       1181 AAATATGTTT

                            * *   *         
       1191 GAAAAATAAGGATATAGTGGTCGATTCAATTA
          1 GAAAAATAAGGATATAATAGTCAATTCAATTA

                       *                 
       1223 GAAAAATAAGGGTATAATAGTCAATTCAA
          1 GAAAAATAAGGATATAATAGTCAATTCAA

       1252 AAGTTTTACA


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  32   25  1.00

ACGTcount: A:0.48, C:0.07, G:0.20, T:0.26


Consensus pattern (32 bp):   
GAAAAATAAGGATATAATAGTCAATTCAATTA

Found at i:5280 original size:18 final size:19

Alignment explanation


    Indices: 5243--5280  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 19

       5233 GCAGCCGTTT

                                 
       5243 TGATGCACCCACTTTTCAATG
          1 TGATGCACCCA--TTTCAATG

                              
       5264 TGATGCACCCA-TTCAAT
          1 TGATGCACCCATTTCAAT

       5281 TCTGATAATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 3
        0.85            0.00        0.15

Matches are distributed among these distances:
  18    6  0.35
  21   11  0.65

ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32


Consensus pattern (19 bp):   
TGATGCACCCATTTCAATG
Done.