Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015742.1 Corchorus olitorius cultivar O-4 contig15775, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4507
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25


Found at i:349 original size:9 final size:8

Alignment explanation


    Indices: 336--368  Score: 57
    Period size: 8  Copynumber: 4.1  Consensus size: 8

        326 ACTTAAAAGA

                    
        336 TAAAAAAC
          1 TAAAAAAC

                    
        344 TAAAAAAC
          1 TAAAAAAC

                    
        352 TAAAAAAC
          1 TAAAAAAC

             *      
        360 TGAAAAAC
          1 TAAAAAAC

             
        368 T
          1 T

        369 CAAAGACACA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   8   24  1.00

ACGTcount: A:0.70, C:0.12, G:0.03, T:0.15


Consensus pattern (8 bp):   
TAAAAAAC

Done.