Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001575.1 Corchorus olitorius cultivar O-4 contig01575, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34


Found at i:150 original size:23 final size:23

Alignment explanation


    Indices: 124--170  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        114 TTTCTTTGGC

                                   
        124 TACAATTTAGTGAATTATCACGT
          1 TACAATTTAGTGAATTATCACGT

                                   
        147 TACAATTTAGTGAATTATCACGT
          1 TACAATTTAGTGAATTATCACGT

             
        170 T
          1 T

        171 TAACCATATG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.34, C:0.13, G:0.13, T:0.40


Consensus pattern (23 bp):   
TACAATTTAGTGAATTATCACGT
Done.