Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015751.1 Corchorus olitorius cultivar O-4 contig15784, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70315

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3049--3315
50
5.4
50
95
1
475
35
11
29
22
1.90
3049--3315
99
2.7
99
95
0
471
35
11
29
22
1.90
3534--3633
29
3.5
28
83
4
128
18
16
23
43
1.88
9869--9901
14
2.3
15
89
5
50
75
9
9
6
1.18
10633--10690
28
2.1
27
81
9
64
63
10
3
22
1.40
15032--15067
1
36.0
1
100
0
72
100
0
0
0
0.00
15346--15445
49
2.0
50
94
1
175
42
8
22
28
1.81
15441--15482
2
21.0
2
95
0
75
47
2
0
50
1.14
15496--17570
685
3.0
688
94
2
3628
37
15
18
28
1.92
24784--24898
57
2.0
57
98
0
221
37
26
9
26
1.87
26984--27526
273
2.0
272
89
3
824
39
17
14
28
1.89
30844--30902
1
59.0
1
89
0
91
94
0
3
1
0.34
33925--33985
32
1.9
32
83
6
79
42
19
16
21
1.89
39729--39816
45
2.0
45
81
0
104
19
37
19
23
1.94
39993--40036
15
2.6
17
83
16
65
59
13
2
25
1.46
56113--56137
13
1.9
13
100
0
50
80
16
0
4
0.87
56200--56312
56
2.0
56
100
0
226
39
8
14
37
1.77
57645--57686
2
21.0
2
100
0
84
50
0
0
50
1.00
57748--57990
128
1.9
128
91
0
396
37
10
9
42
1.71
57989--58019
2
15.0
2
93
6
53
48
3
0
48
1.17
62233--62351
42
2.9
42
86
6
145
25
21
11
41
1.87
63530--63578
12
4.1
12
91
0
71
24
10
16
48
1.76

Tables:   1

The End!