Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015755.1 Corchorus olitorius cultivar O-4 contig15788, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 681

Length: 1136
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:391 original size:40 final size:40

Alignment explanation


    Indices: 336--468  Score: 142
    Period size: 40  Copynumber: 3.1  Consensus size: 40

        326 TTCCTTTAAT

                                                    
        336 ATTGCTGCCTGGCAAGGAGGCAAACAAGTAAATAAGGAAA
          1 ATTGCTGCCTGGCAAGGAGGCAAACAAGTAAATAAGGAAA

                                             **         *  *
        376 ATTGCTGCCTGGCAAGGAGGCAAAC-AGTTAAAGCAGTTTCCTTTAAT
          1 ATTGCTGCCTGGCAAGGAGGCAAACAAG-TAAATAAG-------GAAA

                           *                        
        423 ATTGCTGCCTGGCAATGAGGCAAACAAGTAAATAAGGAAA
          1 ATTGCTGCCTGGCAAGGAGGCAAACAAGTAAATAAGGAAA

                  
        463 ATTGCT
          1 ATTGCT

        469 TACCATCTGA


Statistics
Matches: 75,  Mismatches: 9, Indels: 18
        0.74            0.09        0.18

Matches are distributed among these distances:
  39    2  0.03
  40   39  0.52
  47   32  0.43
  48    2  0.03

ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22


Consensus pattern (40 bp):   
ATTGCTGCCTGGCAAGGAGGCAAACAAGTAAATAAGGAAA
Done.