Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015757.1 Corchorus olitorius cultivar O-4 contig15790, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25808

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
882--1718
35
23.7
35
76
7
530
18
19
21
40
1.92
983--1718
107
7.0
106
81
9
634
18
19
21
40
1.92
1387--1442
25
2.2
25
96
0
103
14
25
25
35
1.93
1312--1514
96
2.1
97
94
0
354
16
19
25
39
1.91
1277--1543
132
2.0
131
82
2
320
16
20
23
39
1.92
1781--1831
16
3.2
16
81
10
59
27
23
3
45
1.70
1781--1831
8
6.4
8
75
8
50
27
23
3
45
1.70
1772--1831
24
2.5
24
84
7
70
26
26
5
41
1.76
1878--2107
51
4.6
51
89
4
344
29
16
19
35
1.93
1878--2076
101
2.0
100
92
2
335
28
15
19
37
1.92
2071--2147
38
2.1
37
90
7
120
36
16
20
25
1.94
2122--2234
54
2.1
54
81
6
131
27
13
23
36
1.92
2232--2436
42
4.9
42
90
1
306
26
17
29
26
1.98
2429--2630
89
2.3
90
83
5
241
26
15
25
32
1.96
9205--9245
20
2.0
20
100
0
82
34
14
9
41
1.79
13442--13522
39
2.1
39
88
4
119
30
20
22
25
1.98
19512--19736
123
1.8
125
86
2
328
29
13
21
35
1.92
19654--19876
78
2.8
78
91
2
358
26
15
22
34
1.94
22898--23041
70
2.1
70
100
0
288
31
24
16
27
1.96
25743--25788
12
3.8
12
85
8
58
6
0
2
89
0.52
25748--25780
1
33.0
1
93
0
57
0
0
0
96
0.04

Tables:   1

The End!