Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015759.1 Corchorus olitorius cultivar O-4 contig15792, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6604
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1042 original size:19 final size:20

Alignment explanation


    Indices: 1008--1045  Score: 69
    Period size: 19  Copynumber: 1.9  Consensus size: 20

        998 GAGAAAATAA

                                
       1008 GCACGGAGCTTGGTTTTTTG
          1 GCACGGAGCTTGGTTTTTTG

                               
       1028 GCACGGAGC-TGGTTTTTT
          1 GCACGGAGCTTGGTTTTTT

       1046 ATTTCTCGGG


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  19    9  0.50
  20    9  0.50

ACGTcount: A:0.11, C:0.16, G:0.34, T:0.39


Consensus pattern (20 bp):   
GCACGGAGCTTGGTTTTTTG

Found at i:4251 original size:13 final size:13

Alignment explanation


    Indices: 4233--4257  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       4223 TTTGCCAAAA

                         
       4233 AATAATTTTAAGC
          1 AATAATTTTAAGC

                        
       4246 AATAATTTTAAG
          1 AATAATTTTAAG

       4258 GTGGTAAAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40


Consensus pattern (13 bp):   
AATAATTTTAAGC
Done.