Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015760.1 Corchorus olitorius cultivar O-4 contig15793, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59004

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1321--1418
50
2.0
49
89
2
151
29
11
13
45
1.78
4529--4591
32
2.0
32
87
6
92
33
26
7
31
1.85
9608--9633
12
2.2
12
100
0
52
92
0
7
0
0.39
19367--19496
65
2.0
65
87
0
188
23
28
25
22
1.99
23370--23404
17
2.1
17
94
0
61
45
0
14
40
1.45
28377--28444
5
11.8
6
77
17
65
20
33
29
16
1.94
28377--28431
23
2.5
22
85
11
76
21
34
29
14
1.93
28963--29018
20
2.8
20
94
0
94
26
10
41
21
1.86
29349--29390
21
2.0
22
85
4
59
26
21
16
35
1.94
29524--29595
36
2.0
36
94
0
126
18
29
13
38
1.89
29758--29859
53
1.9
53
91
0
168
32
27
13
26
1.94
35053--35115
30
2.1
30
91
5
101
58
14
6
20
1.57
36415--36475
21
2.9
22
71
28
60
49
3
9
37
1.52
44047--44077
11
2.8
11
90
0
53
35
22
9
32
1.87
48845--48920
12
6.7
11
71
23
52
43
1
1
53
1.17
48848--48913
21
3.0
22
80
8
73
40
1
1
56
1.18
48848--48927
21
4.0
20
78
16
69
43
1
1
53
1.16
49818--49859
19
2.4
17
88
11
59
42
30
0
26
1.55
49935--50011
40
1.9
40
91
0
127
29
5
18
46
1.70
50034--50102
33
2.1
33
91
5
113
10
42
36
11
1.75
52320--52365
18
2.5
18
80
16
58
17
13
6
63
1.50
53061--53087
14
1.9
14
100
0
54
44
7
11
37
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54805--54845
19
2.2
19
86
8
57
58
4
2
34
1.32
56183--56209
14
1.9
14
100
0
54
14
29
40
14
1.86
56198--56271
33
2.2
33
85
0
94
18
39
31
10
1.86
57719--57928
22
9.5
22
67
11
90
37
10
16
35
1.83
57720--57845
44
2.9
44
78
7
121
35
11
18
34
1.86
57716--57890
66
2.7
66
80
7
203
34
10
18
36
1.86
57933--58374
22
20.6
22
69
16
141
38
9
16
35
1.82
58192--58344
82
1.9
83
83
1
200
39
9
18
32
1.82
58881--58961
39
2.0
40
92
2
137
50
8
3
37
1.51

Tables:   1

The End!