Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015761.1 Corchorus olitorius cultivar O-4 contig15794, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30770

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10--50
2
20.5
2
100
0
82
51
0
0
48
1.00
141--1116
178
5.5
178
83
4
1119
33
12
16
37
1.86
1242--1274
14
2.3
15
89
5
50
30
9
3
57
1.45
3017--3122
41
2.6
41
86
3
151
33
15
16
34
1.89
3424--3479
11
4.9
11
73
16
51
55
10
1
32
1.45
3868--3905
3
13.0
3
94
5
69
34
0
0
65
0.93
9220--9261
18
2.3
18
88
8
59
54
2
2
40
1.26
11266--11306
21
2.0
20
90
4
64
63
0
12
24
1.28
12190--12650
70
6.7
70
73
8
354
38
11
20
29
1.88
12250--12370
62
1.9
63
91
1
199
37
14
19
29
1.90
12192--12440
132
1.9
133
84
2
340
39
12
19
28
1.88
12509--12651
71
2.0
72
82
4
173
37
9
21
30
1.86
13550--13585
17
2.1
17
89
0
54
2
22
0
75
0.94
16797--16848
22
2.3
23
81
12
56
23
3
9
63
1.41
18052--18094
22
2.0
22
95
0
77
23
34
23
18
1.96
18916--18958
22
2.0
22
95
0
77
18
23
34
23
1.96
20264--20305
15
2.8
15
89
7
59
14
23
16
45
1.84
25680--25727
24
2.0
25
83
4
62
16
6
6
70
1.28
27219--27283
32
2.0
32
82
5
78
30
15
18
35
1.92
28265--28336
33
2.2
33
87
5
101
48
13
4
33
1.62
28425--28462
2
19.0
2
100
0
76
50
0
0
50
1.00

Tables:   1

The End!