Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015762.1 Corchorus olitorius cultivar O-4 contig15795, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40766

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1036--1074
2
19.5
2
100
0
78
51
0
0
48
1.00
8655--9050
39
10.1
39
76
7
309
39
11
19
30
1.86
8836--9088
77
3.2
76
80
7
233
39
11
20
29
1.87
8864--9107
117
2.1
118
79
9
268
41
11
19
27
1.86
9138--9521
145
2.6
141
87
6
520
33
15
21
28
1.94
18209--18246
2
19.0
2
100
0
76
0
50
0
50
1.00
20339--20616
138
2.0
137
97
2
531
42
17
20
18
1.89
36571--36624
1
54.0
1
81
0
63
90
9
0
0
0.45
36574--36622
8
5.9
8
88
7
71
89
10
0
0
0.48
36573--36623
9
5.9
9
86
9
79
90
9
0
0
0.46
36571--36626
25
2.2
25
93
6
96
89
10
0
0
0.49
37155--37229
29
2.5
30
84
4
89
33
18
9
38
1.83
37356--37421
31
2.1
32
91
2
107
42
10
13
33
1.79
38429--38522
31
3.1
31
92
6
149
34
13
11
40
1.81
38666--38740
30
2.5
30
89
6
107
44
13
18
24
1.85
39432--39463
16
2.0
16
93
0
55
43
6
9
40
1.62
40320--40355
19
1.9
18
88
5
54
41
5
22
30
1.76

Tables:   1

The End!