Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01015763.1 Corchorus olitorius cultivar O-4 contig15796, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 74579
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:1567 original size:2 final size:2
Alignment explanation
Indices: 1560--1585 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1550 TCTCAATTAA
1560 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
1586 ATTACCAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:2089 original size:57 final size:57
Alignment explanation
Indices: 1971--2088 Score: 150
Period size: 57 Copynumber: 2.1 Consensus size: 57
1961 CTCCCAAATT
* * ** ** *
1971 AAAAACCCTTTAATACCTTCAATTTGCTTCAATTAAGATCAATTGATTCAACTTTCC
1 AAAAACACTTTAATACCTCCAATTTGCTTCAATTAAGATCAATTGACCCAACAATCA
2028 AAAAACACTTTAATACCTCCAATTTGCTTCAATTAAGATCAATTG-CCC-ACAAATCA
1 AAAAACACTTTAATACCTCCAATTTGCTTCAATTAAGATCAATTGACCCAAC-AATCA
2084 AAAAA
1 AAAAA
2089 AATCCAATTC
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
55 2 0.04
56 8 0.15
57 43 0.81
ACGTcount: A:0.41, C:0.23, G:0.05, T:0.31
Consensus pattern (57 bp):
AAAAACACTTTAATACCTCCAATTTGCTTCAATTAAGATCAATTGACCCAACAATCA
Found at i:2480 original size:10 final size:10
Alignment explanation
Indices: 2465--2507 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
2455 TCTGGTCGAA
*
2465 ATTTTTTTTT
1 ATTTTTTTAT
*
2475 ATTTTTTTAA
1 ATTTTTTTAT
2485 ATTTTTTTGAT
1 ATTTTTTT-AT
*
2496 ATTTTTTGAT
1 ATTTTTTTAT
2506 AT
1 AT
2508 AACAGTGATG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
10 20 0.71
11 8 0.29
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (10 bp):
ATTTTTTTAT
Found at i:2488 original size:20 final size:21
Alignment explanation
Indices: 2463--2502 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
2453 TTTCTGGTCG
*
2463 AAATTTTTTT-TTATTTTTTT
1 AAATTTTTTTGATATTTTTTT
2483 AAATTTTTTTGATATTTTTT
1 AAATTTTTTTGATATTTTTT
2503 GATATAACAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.75
Consensus pattern (21 bp):
AAATTTTTTTGATATTTTTTT
Found at i:3854 original size:75 final size:75
Alignment explanation
Indices: 3731--3880 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
3721 GATCGTATGA
3731 TCCATTTGCTAGTATGGACAGGAATTTTCGAGTTATGTTTACTTGATGTGCGGTCAATCCCATTT
1 TCCATTTGCTAGTATGGACAGGAATTTTCGAGTTATGTTTACTTGATGTGCGGTCAATCCCATTT
3796 GTTCGAGTAG
66 GTTCGAGTAG
3806 TCCATTTGCTAGTATGGACAGGAATTTTCGAGTTATGTTTACTTGATGTGCGGTCAATCCCATTT
1 TCCATTTGCTAGTATGGACAGGAATTTTCGAGTTATGTTTACTTGATGTGCGGTCAATCCCATTT
3871 GTTCGAGTAG
66 GTTCGAGTAG
3881 GAGTATGTTG
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.39
Consensus pattern (75 bp):
TCCATTTGCTAGTATGGACAGGAATTTTCGAGTTATGTTTACTTGATGTGCGGTCAATCCCATTT
GTTCGAGTAG
Found at i:11109 original size:45 final size:46
Alignment explanation
Indices: 11033--11122 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 46
11023 GCGTGTAATA
** * *
11033 TCAATTATATTAGGGCCAATAGGGGAGTTTCATTTCTTGTTGATTG
1 TCAATTATATTAGGGCCAATAGAAGAATTTCATTTCTTATTGATTG
* *
11079 TCAATTATGTT-GGGCGAATAGAAGAATTTCATTTCTTATTGATT
1 TCAATTATATTAGGGCCAATAGAAGAATTTCATTTCTTATTGATT
11123 AGCAAGTGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
45 28 0.74
46 10 0.26
ACGTcount: A:0.27, C:0.10, G:0.21, T:0.42
Consensus pattern (46 bp):
TCAATTATATTAGGGCCAATAGAAGAATTTCATTTCTTATTGATTG
Found at i:13002 original size:47 final size:47
Alignment explanation
Indices: 12933--13075 Score: 193
Period size: 47 Copynumber: 3.0 Consensus size: 47
12923 GATTCGGTTC
12933 TAATCGAAGAATCGAACCAGAACTGAATCGAAATCACACTTTCAAAA
1 TAATCGAAGAATCGAACCAGAACTGAATCGAAATCACACTTTCAAAA
12980 TAATCGAAGAATCGAACCAGAACTGAATCGAAATCACACTTTCAAAA
1 TAATCGAAGAATCGAACCAGAACTGAATCGAAATCACACTTTCAAAA
* * * *
13027 TCGAATCG--G-TTCTAATCGAAGAACTGAACCGAAATCACACTTTCAAAA
1 T--AATCGAAGAATCGAA-C-CAGAACTGAATCGAAATCACACTTTCAAAA
13075 T
1 T
13076 CGAATTGGTT
Statistics
Matches: 88, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
46 4 0.05
47 50 0.57
48 29 0.33
49 5 0.06
ACGTcount: A:0.44, C:0.22, G:0.13, T:0.21
Consensus pattern (47 bp):
TAATCGAAGAATCGAACCAGAACTGAATCGAAATCACACTTTCAAAA
Found at i:13010 original size:24 final size:24
Alignment explanation
Indices: 12934--13011 Score: 76
Period size: 24 Copynumber: 3.3 Consensus size: 24
12924 ATTCGGTTCT
12934 AATCGAAGAATCGAACCAGAACTG
1 AATCGAAGAATCGAACCAGAACTG
*
12958 AATCG-A-AATC-ACACTTTCA-AAAT-
1 AATCGAAGAATCGA-AC---CAGAACTG
12981 AATCGAAGAATCGAACCAGAACTG
1 AATCGAAGAATCGAACCAGAACTG
13005 AATCGAA
1 AATCGAA
13012 ATCACACTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 18
0.68 0.03 0.29
Matches are distributed among these distances:
21 1 0.02
22 8 0.19
23 9 0.21
24 16 0.37
25 8 0.19
26 1 0.02
ACGTcount: A:0.47, C:0.21, G:0.15, T:0.17
Consensus pattern (24 bp):
AATCGAAGAATCGAACCAGAACTG
Found at i:13046 original size:59 final size:59
Alignment explanation
Indices: 12980--13138 Score: 214
Period size: 48 Copynumber: 2.9 Consensus size: 59
12970 ACTTTCAAAA
*
12980 TAATCGAAGAATCGAACCAGAACTGAATCGAAATCACACTTTCAAAATCGAATCGGTTC
1 TAATCGAAGAATCGAACCAGAACTGAACCGAAATCACACTTTCAAAATCGAATCGGTTC
*
13039 ---T-----AATCG-A--AGAACTGAACCGAAATCACACTTTCAAAATCGAATTGGTTC
1 TAATCGAAGAATCGAACCAGAACTGAACCGAAATCACACTTTCAAAATCGAATCGGTTC
*
13087 TAATCGAAGAACCGAACCAGAACTGAACCGAAATCACACTTTCAAAATCGAA
1 TAATCGAAGAATCGAACCAGAACTGAACCGAAATCACACTTTCAAAATCGAA
13139 ACTGAAACTA
Statistics
Matches: 86, Mismatches: 3, Indels: 22
0.77 0.03 0.20
Matches are distributed among these distances:
48 39 0.45
50 1 0.01
51 6 0.07
56 5 0.06
57 1 0.01
59 34 0.40
ACGTcount: A:0.42, C:0.23, G:0.14, T:0.21
Consensus pattern (59 bp):
TAATCGAAGAATCGAACCAGAACTGAACCGAAATCACACTTTCAAAATCGAATCGGTTC
Found at i:13069 original size:48 final size:48
Alignment explanation
Indices: 12951--13104 Score: 190
Period size: 48 Copynumber: 3.2 Consensus size: 48
12941 GAATCGAACC
* * * *
12951 AGAACTGAATCGAAATCACACTTTCAAAAT--AATCGAAGAATCGAA-C-C
1 AGAACTGAACCGAAATCACACTTTCAAAATCGAATCG--G-TTCTAATCGA
*
12998 AGAACTGAATCGAAATCACACTTTCAAAATCGAATCGGTTCTAATCGA
1 AGAACTGAACCGAAATCACACTTTCAAAATCGAATCGGTTCTAATCGA
*
13046 AGAACTGAACCGAAATCACACTTTCAAAATCGAATTGGTTCTAATCGA
1 AGAACTGAACCGAAATCACACTTTCAAAATCGAATCGGTTCTAATCGA
*
13094 AGAACCGAACC
1 AGAACTGAACC
13105 AGAACTGAAC
Statistics
Matches: 97, Mismatches: 6, Indels: 7
0.88 0.05 0.06
Matches are distributed among these distances:
46 4 0.04
47 32 0.33
48 56 0.58
49 5 0.05
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.21
Consensus pattern (48 bp):
AGAACTGAACCGAAATCACACTTTCAAAATCGAATCGGTTCTAATCGA
Found at i:13226 original size:2 final size:2
Alignment explanation
Indices: 13219--13261 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
13209 GTTATGATTA
*
13219 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13261 A
1 A
13262 ATAATAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:18186 original size:19 final size:19
Alignment explanation
Indices: 18136--18186 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
18126 CATAAGATTT
18136 TTAATAA-TAATTATTCAA
1 TTAATAATTAATTATTCAA
* *
18154 TAAAATAATT-ATTATTTAA
1 T-TAATAATTAATTATTCAA
18173 TTAATAATTAATTA
1 TTAATAATTAATTA
18187 ATTTCAGTCC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
18 8 0.30
19 18 0.67
20 1 0.04
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (19 bp):
TTAATAATTAATTATTCAA
Found at i:32851 original size:14 final size:14
Alignment explanation
Indices: 32832--32859 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32822 AAAATGCACA
32832 AAATTTAGTTCAAT
1 AAATTTAGTTCAAT
32846 AAATTTAGTTCAAT
1 AAATTTAGTTCAAT
32860 CCATAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
AAATTTAGTTCAAT
Found at i:37256 original size:2 final size:2
Alignment explanation
Indices: 37249--37278 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
37239 TTTCTTTTCA
*
37249 CT CT CT CT CT CT CT CT CT CC CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
37279 TCTTCTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (2 bp):
CT
Found at i:44110 original size:6 final size:6
Alignment explanation
Indices: 44099--44125 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
44089 GACATGACAT
44099 GAAGTA GAAGTA GAAGTA GAAGTA GAA
1 GAAGTA GAAGTA GAAGTA GAAGTA GAA
44126 ACTGAGTCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.33, T:0.15
Consensus pattern (6 bp):
GAAGTA
Found at i:52422 original size:22 final size:22
Alignment explanation
Indices: 52391--52545 Score: 118
Period size: 22 Copynumber: 7.1 Consensus size: 22
52381 CTTCAACATA
*
52391 GAAATATTGATAACCACACTAT
1 GAAATTTTGATAACCACACTAT
* * *
52413 GAAATTTTGATAACCTCAGTGT
1 GAAATTTTGATAACCACACTAT
* * * *
52435 GGAATTTTGATAATCTCCCTAT
1 GAAATTTTGATAACCACACTAT
52457 -ACAATTTTGATAACCACACTAT
1 GA-AATTTTGATAACCACACTAT
* * * *
52479 -ATA-GTTGGTAACCGCACTAT
1 GAAATTTTGATAACCACACTAT
* *
52499 GAAAATTTTAATAACCACACCAT
1 G-AAATTTTGATAACCACACTAT
* * *
52522 GAAAATTTGATAACCTCCCTAT
1 GAAATTTTGATAACCACACTAT
52544 GA
1 GA
52546 GAATGAAACT
Statistics
Matches: 101, Mismatches: 28, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
20 14 0.14
21 1 0.01
22 73 0.72
23 13 0.13
ACGTcount: A:0.37, C:0.19, G:0.12, T:0.32
Consensus pattern (22 bp):
GAAATTTTGATAACCACACTAT
Found at i:52588 original size:22 final size:22
Alignment explanation
Indices: 52557--52609 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
52547 AATGAAACTG
* *
52557 TGATATCCTCT-CTATATAATTT
1 TGATAACCTCTAC-ATAAAATTT
52579 TGATAACCTCTACATAAAATTT
1 TGATAACCTCTACATAAAATTT
*
52601 TCATAACCT
1 TGATAACCT
52610 ACTTATGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 26 0.96
23 1 0.04
ACGTcount: A:0.34, C:0.21, G:0.04, T:0.42
Consensus pattern (22 bp):
TGATAACCTCTACATAAAATTT
Found at i:52715 original size:22 final size:22
Alignment explanation
Indices: 52675--52864 Score: 84
Period size: 22 Copynumber: 8.6 Consensus size: 22
52665 AAATTCCCTC
* *
52675 CTTATGAAATTTGGTTAACCTT
1 CTTATGAAATTTTGATAACCTT
**
52697 CTTATGAAATTTTGATAACCAAA
1 CTTATGAAATTTTGATAACC-TT
* *
52720 C-TATAAAATTTCT-ATAACTTT
1 CTTATGAAATTT-TGATAACCTT
* * * *
52741 CGTATAAAATTTTGTTAACCTC
1 CTTATGAAATTTTGATAACCTT
* * * *
52763 CCTAGGAAATTTTAATAATCTT
1 CTTATGAAATTTTGATAACCTT
* * * *
52785 TTTATGAAAATTTGGTTAA-ATT
1 CTTATG-AAATTTTGATAACCTT
* * *
52807 -TGTATGAAATTTTGGTCACCATA
1 CT-TATGAAATTTTGATAACC-TT
*
52830 C-TATGAAAATTTGATAACCTT
1 CTTATGAAATTTTGATAACCTT
* *
52851 CCTATGTAATTTTG
1 CTTATGAAATTTTG
52865 GTTTGATTGT
Statistics
Matches: 122, Mismatches: 36, Indels: 20
0.69 0.20 0.11
Matches are distributed among these distances:
21 14 0.11
22 96 0.79
23 12 0.10
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.43
Consensus pattern (22 bp):
CTTATGAAATTTTGATAACCTT
Found at i:53649 original size:3 final size:3
Alignment explanation
Indices: 53643--53683 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
53633 GTTGTTGCAC
53643 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
53684 AAACATACAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:54067 original size:15 final size:17
Alignment explanation
Indices: 54037--54076 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
54027 AACGAATTAA
54037 TTAAATAAATATAAATT
1 TTAAATAAATATAAATT
54054 TTAAATAAA-A-AAATT
1 TTAAATAAATATAAATT
*
54069 TCAAATAA
1 TTAAATAA
54077 TTTTGGGAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 12 0.55
16 1 0.05
17 9 0.41
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAATAAATATAAATT
Found at i:54587 original size:2 final size:2
Alignment explanation
Indices: 54575--54615 Score: 73
Period size: 2 Copynumber: 20.0 Consensus size: 2
54565 TTCGTGATTT
54575 TA TA TA GTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
54616 ATAAGATAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 36 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:54635 original size:13 final size:13
Alignment explanation
Indices: 54617--54641 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
54607 ATATATATAA
54617 TAAGATAAGATAG
1 TAAGATAAGATAG
54630 TAAGATAAGATA
1 TAAGATAAGATA
54642 TATATAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.20, T:0.24
Consensus pattern (13 bp):
TAAGATAAGATAG
Found at i:58575 original size:9 final size:9
Alignment explanation
Indices: 58561--58586 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
58551 CCAGGCCTTA
58561 AGCCCAAAG
1 AGCCCAAAG
58570 AGCCCAAAG
1 AGCCCAAAG
58579 AGCCCAAA
1 AGCCCAAA
58587 CCCAAAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.35, G:0.19, T:0.00
Consensus pattern (9 bp):
AGCCCAAAG
Found at i:59472 original size:7 final size:7
Alignment explanation
Indices: 59460--59502 Score: 86
Period size: 7 Copynumber: 6.1 Consensus size: 7
59450 TCTCTCAACT
59460 GACATTG
1 GACATTG
59467 GACATTG
1 GACATTG
59474 GACATTG
1 GACATTG
59481 GACATTG
1 GACATTG
59488 GACATTG
1 GACATTG
59495 GACATTG
1 GACATTG
59502 G
1 G
59503 CATGCATTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.28
Consensus pattern (7 bp):
GACATTG
Found at i:67713 original size:25 final size:25
Alignment explanation
Indices: 67679--67726 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
67669 ACGAATAACT
67679 AGTAGAACCAGCTAGCATATCCTCA
1 AGTAGAACCAGCTAGCATATCCTCA
*
67704 AGTAGAACCAGCTAGCGTATCCT
1 AGTAGAACCAGCTAGCATATCCT
67727 GTGGTTCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.27, G:0.19, T:0.21
Consensus pattern (25 bp):
AGTAGAACCAGCTAGCATATCCTCA
Found at i:68300 original size:20 final size:20
Alignment explanation
Indices: 68275--68314 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
68265 TTTCACTTTG
68275 TTGCCCTCAAGAACTTGATA
1 TTGCCCTCAAGAACTTGATA
68295 TTGCCCTCAAGAACTTGATA
1 TTGCCCTCAAGAACTTGATA
68315 AACTTGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (20 bp):
TTGCCCTCAAGAACTTGATA
Found at i:68581 original size:1 final size:1
Alignment explanation
Indices: 68575--68612 Score: 76
Period size: 1 Copynumber: 38.0 Consensus size: 1
68565 ATTTGAAGGG
68575 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
68613 ACTTATAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Done.