Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015765.1 Corchorus olitorius cultivar O-4 contig15798, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69256

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1786--1890
33
3.2
31
83
11
120
43
23
7
24
1.80
4389--4430
21
2.0
21
100
0
84
33
28
19
19
1.96
8082--8108
2
13.5
2
100
0
54
51
48
0
0
1.00
11358--11399
17
2.5
17
88
7
59
35
23
19
21
1.96
30438--30511
24
3.1
24
72
14
71
29
22
27
20
1.98
30449--30525
24
3.2
24
74
7
75
36
19
24
19
1.95
33949--33973
12
2.1
12
100
0
50
28
8
16
48
1.74
34268--34306
14
2.7
14
84
4
51
30
15
10
43
1.80
34270--34320
15
3.5
15
83
2
59
35
13
9
41
1.78
35394--35475
42
1.9
43
85
5
112
41
10
21
25
1.86
35414--35503
44
2.1
42
85
4
117
43
10
22
24
1.83
37048--37136
37
2.6
35
81
13
105
25
17
7
48
1.75
37267--37317
21
2.5
20
81
15
59
9
9
5
74
1.21
44858--44910
2
26.5
2
100
0
106
0
0
49
50
1.00
51981--52091
49
2.3
49
100
0
222
41
18
6
34
1.75
60023--60722
351
2.0
349
93
2
1185
32
14
16
36
1.89
65906--65948
22
1.9
22
81
13
52
30
11
4
53
1.57
66024--66096
22
3.3
21
75
3
65
38
15
12
34
1.84
66227--66307
22
3.7
21
75
6
72
39
11
11
38
1.76
66969--67004
17
2.1
17
94
0
63
8
16
2
72
1.21

Tables:   1

The End!