Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015767.1 Corchorus olitorius cultivar O-4 contig15800, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83354

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127--206
17
5.3
17
63
36
58
7
37
38
16
1.77
110--240
29
4.5
29
96
0
226
8
38
37
16
1.78
1257--1310
26
2.1
26
100
0
108
62
0
11
25
1.28
4547--4776
121
2.0
112
85
9
309
31
8
10
49
1.66
5165--5399
22
10.6
22
72
8
82
36
8
18
36
1.82
5160--5394
44
5.3
44
72
7
161
36
8
17
37
1.81
5165--5266
22
4.6
23
73
10
86
37
10
16
35
1.84
5161--5399
66
3.6
66
73
11
200
35
8
17
37
1.81
5411--5496
22
4.0
21
75
15
70
41
5
16
36
1.72
5411--5496
44
2.0
43
81
6
102
41
5
16
36
1.72
21312--21447
64
2.2
60
88
7
195
38
22
12
27
1.90
21397--21435
14
2.6
14
88
8
51
43
15
7
33
1.75
21630--21733
22
4.7
22
66
4
66
40
10
15
33
1.82
27182--27818
159
4.0
159
90
1
967
31
21
23
24
1.98
27182--27818
315
2.0
317
89
1
983
31
21
23
24
1.98
45404--45439
1
36.0
1
100
0
72
100
0
0
0
0.00
49552--49582
16
1.9
16
100
0
62
38
12
16
32
1.86
51805--51838
2
17.0
2
100
0
68
50
0
0
50
1.00
56723--56751
12
2.3
13
94
5
51
6
0
10
82
0.83
56770--56836
31
2.1
32
86
2
91
19
23
20
35
1.95
64198--64246
21
2.4
21
77
16
57
67
6
8
18
1.37
68090--68134
22
2.0
23
91
4
74
26
17
8
46
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68716--68764
21
2.4
21
77
16
57
67
6
8
18
1.37
74535--74610
34
2.2
34
100
0
152
35
5
11
47
1.63
74556--74612
17
3.4
17
70
0
60
35
5
10
49
1.60
79918--79954
19
1.9
19
100
0
74
16
18
10
54
1.71
81174--81219
24
1.9
24
95
0
83
32
26
15
26
1.95
82166--82750
290
2.0
293
91
2
962
23
16
17
42
1.88
83057--83150
45
2.2
43
88
7
138
38
21
5
35
1.76

Tables:   1

The End!