Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01015770.1 Corchorus olitorius cultivar O-4 contig15803, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3499
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.43


Found at i:73 original size:22 final size:22

Alignment explanation


    Indices: 45--174  Score: 98
    Period size: 22  Copynumber: 5.5  Consensus size: 22

         35 CAACAAGAAG

                                  
         45 TGCTCTGCAAAGTGGAAAATAA
          1 TGCTCTGCAAAGTGGAAAATAA

                             ***     
         67 TGCTCTGCAAAGATGTTTCCAATAA
          1 TGCTCTGCAAAG-TG--GAAAATAA

               ***   *                
         92 TGCAAAGCTGAAGTTGAAGAAAATAA
          1 TGCTCTGC-AAAG-TG--GAAAATAA

                               *    
        118 TGCACTCTGCAAAGTGGAAGATAA
          1 TG--CTCTGCAAAGTGGAAAATAA

                           *      
        142 TGCTCTGCAAAGTGGTAAATAA
          1 TGCTCTGCAAAGTGGAAAATAA

                       
        164 TGCTCTGCAAA
          1 TGCTCTGCAAA

        175 AATGTTTCCA


Statistics
Matches: 82,  Mismatches: 20, Indels: 12
        0.72            0.18        0.11

Matches are distributed among these distances:
  22   41  0.50
  23    2  0.02
  24    9  0.11
  25   10  0.12
  26   14  0.17
  27    3  0.04
  28    3  0.04

ACGTcount: A:0.38, C:0.15, G:0.22, T:0.25


Consensus pattern (22 bp):   
TGCTCTGCAAAGTGGAAAATAA

Done.