Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015771.1 Corchorus olitorius cultivar O-4 contig15804, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52123

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
494--765
149
1.8
151
87
3
406
37
8
2
50
1.49
494--801
150
2.0
149
82
7
365
37
8
4
49
1.53
1047--1100
15
3.5
15
70
5
54
9
18
38
33
1.83
1025--1099
31
2.4
31
93
0
123
12
18
36
33
1.88
1705--2779
439
2.5
432
81
7
1242
43
12
13
29
1.81
3205--3253
2
25.0
2
91
4
82
48
2
0
48
1.12
4887--4936
10
4.9
10
75
22
50
38
2
2
58
1.21
4922--4962
21
2.0
21
85
9
57
53
0
0
46
1.00
9043--9096
19
2.6
21
77
19
60
38
18
3
38
1.69
10572--10612
20
2.1
20
86
4
57
12
19
9
58
1.61
11199--11372
50
3.5
50
82
7
192
18
12
12
56
1.66
20019--20095
36
2.5
28
71
28
82
35
1
22
41
1.62
20028--20115
36
2.4
36
98
0
167
36
1
25
37
1.63
20108--20134
12
2.2
12
100
0
54
33
0
7
59
1.25
21019--21096
22
3.5
23
81
15
85
39
1
0
58
1.06
21049--21099
25
2.0
25
85
7
68
39
0
0
60
0.97
21528--21583
29
2.0
28
92
3
94
39
21
10
28
1.87
23198--23256
15
4.0
15
73
18
52
35
8
13
42
1.75
24246--24279
5
6.8
5
93
6
52
0
14
0
85
0.60
29334--29407
16
4.7
15
75
9
58
55
28
9
6
1.57
29334--29407
32
2.3
32
83
0
85
55
28
9
6
1.57
29636--29712
16
4.9
15
70
9
55
41
33
7
16
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29624--29717
32
3.0
32
82
1
109
40
30
8
20
1.82
30232--30270
16
2.5
16
87
4
62
48
33
10
7
1.66
30431--30520
32
2.8
32
87
0
126
41
31
7
20
1.80
30439--30490
16
3.2
16
71
10
52
40
30
7
21
1.81
33427--33494
3
22.7
3
100
0
136
67
0
32
0
0.91
35353--35419
31
2.2
31
97
0
125
31
11
7
49
1.67
36586--36629
10
4.2
10
82
8
52
81
0
13
4
0.83
36589--36629
21
1.9
21
85
5
55
82
0
12
4
0.81
42864--42904
5
8.2
5
91
0
64
41
39
2
17
1.62
43916--43958
18
2.4
18
84
0
50
4
51
2
41
1.35
45856--45958
52
2.0
50
85
8
154
46
6
11
34
1.67
46067--46097
16
1.9
16
100
0
62
32
12
0
54
1.38
46954--46995
20
2.0
22
86
9
61
35
14
2
47
1.57
49188--49575
199
2.0
192
87
5
555
34
15
13
36
1.87

Tables:   1

The End!