Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01015780.1 Corchorus olitorius cultivar O-4 contig15813, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42017

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--32
2
16.0
2
100
0
64
50
0
0
50
1.00
1780--1844
20
3.2
20
69
20
53
38
0
6
55
1.25
8479--8524
19
2.4
19
92
0
74
34
6
34
23
1.81
11724--11769
21
2.2
21
88
7
67
63
8
2
26
1.35
18639--18678
19
2.2
18
86
4
53
57
7
15
20
1.61
33345--33374
2
15.0
2
100
0
60
0
0
50
50
1.00
35040--35380
170
2.0
170
94
1
603
17
27
16
38
1.91
38470--38503
2
17.0
2
100
0
68
50
0
0
50
1.00
39106--39388
142
2.0
142
92
1
469
38
22
8
30
1.84
41922--42017
2
48.0
2
100
0
192
50
0
50
0
1.00

Tables:   1

The End!